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单细胞RNA测序揭示了间充质基质细胞多能样和多能群体的不同特征。

Single-cell RNA sequencing reveals different signatures of mesenchymal stromal cell pluripotent-like and multipotent populations.

作者信息

Oguma Yo, Kuroda Yasumasa, Wakao Shohei, Kushida Yoshihiro, Dezawa Mari

机构信息

Department of Stem Cell Biology and Histology, Tohoku University Graduate School of Medicine, 2-1 Seiryomachi, Aobaku, Sendai 980-8575, Japan.

出版信息

iScience. 2022 Oct 20;25(11):105395. doi: 10.1016/j.isci.2022.105395. eCollection 2022 Nov 18.

DOI:10.1016/j.isci.2022.105395
PMID:36339265
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9633745/
Abstract

Somatic stem cells are advantageous research targets for understanding the properties required to maintain stemness. Human bone marrow-mesenchymal stromal cells (BM-MSCs) were separated into pluripotent-like SSEA-3(+) Muse cells (Muse-MSCs) and multipotent SSEA-3(-) MSCs (MSCs) and were subjected to single-cell RNA sequencing analysis. Compared with MSCs, Muse-MSCs exhibited higher expression levels of the p53 repressor ; signal acceptance-related genes EGF, VEGF, PDGF, WNT, TGFB, INHB, and CSF; ribosomal protein; and glycolysis and oxidative phosphorylation. Conversely, MSCs had higher expression levels of FGF and ANGPT; Rho family and caveola-related genes; amino acid and cofactor metabolism; MHC class I/II, and lysosomal enzyme genes than Muse-MSCs. Unsupervised clustering further divided Muse-MSCs into two clusters stratified by the expression of cell cycle-related genes, and MSCs into three clusters stratified by the expression of cell cycle-, cytoskeleton-, and extracellular matrix-related genes. This study evaluating the differentiation ability of BM-MSC subpopulations provides intriguing insights for understanding stemness.

摘要

体细胞干细胞是理解维持干性所需特性的有利研究靶点。人骨髓间充质基质细胞(BM-MSCs)被分离为多能样SSEA-3(+)缪斯细胞(Muse-MSCs)和多能SSEA-3(-) MSCs(MSCs),并进行单细胞RNA测序分析。与MSCs相比,Muse-MSCs表现出更高水平的p53阻遏物表达;信号接受相关基因EGF、VEGF、PDGF、WNT、TGFB、INHB和CSF;核糖体蛋白;以及糖酵解和氧化磷酸化。相反,MSCs在FGF和ANGPT;Rho家族和小窝相关基因;氨基酸和辅因子代谢;MHC I/II类以及溶酶体酶基因方面的表达水平高于Muse-MSCs。无监督聚类进一步将Muse-MSCs分为两个由细胞周期相关基因表达分层的簇,将MSCs分为三个由细胞周期、细胞骨架和细胞外基质相关基因表达分层的簇。这项评估BM-MSC亚群分化能力的研究为理解干性提供了有趣的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d9fb/9633745/fc9ba995ee0e/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d9fb/9633745/27230cea452e/fx1.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d9fb/9633745/854df4773fcb/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d9fb/9633745/de151c63e8a5/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d9fb/9633745/a27d8c6e3c3b/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d9fb/9633745/07a242af7c78/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d9fb/9633745/fc9ba995ee0e/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d9fb/9633745/27230cea452e/fx1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d9fb/9633745/582c33915997/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d9fb/9633745/69da4124b042/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d9fb/9633745/854df4773fcb/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d9fb/9633745/de151c63e8a5/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d9fb/9633745/a27d8c6e3c3b/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d9fb/9633745/07a242af7c78/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d9fb/9633745/fc9ba995ee0e/gr7.jpg

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