从有机罗勒中分离出的乳酸乳球菌PrHT3菌株的基因组序列草图
Draft Genome Sequence of Lactococcus lactis Strain PrHT3, Isolated from Organic Basil.
作者信息
Truitt Chelsea, Meza Guadalupe, Tiong Hung King, Hoyt Peter R, Deole Ratnakar
机构信息
Oklahoma State University Center for Health Sciences, Tulsa, Oklahoma, USA.
University of West Alabama, Livingston, Alabama, USA.
出版信息
Microbiol Resour Announc. 2022 Dec 15;11(12):e0062922. doi: 10.1128/mra.00629-22. Epub 2022 Nov 7.
Abstract
Here, we report the draft genome sequence of Lactococcus lactis strain PrHT3, which was isolated from organic basil. This strain possesses one chromosome and two plasmids. This strain possesses potential probiotic characteristics.
摘要
在此，我们报告了从有机罗勒中分离出的乳酸乳球菌PrHT3菌株的基因组序列草图。该菌株有一条染色体和两个质粒。该菌株具有潜在的益生菌特性。
相似文献
1
Draft Genome Sequence of Lactococcus lactis Strain PrHT3, Isolated from Organic Basil.从有机罗勒中分离出的乳酸乳球菌PrHT3菌株的基因组序列草图
Microbiol Resour Announc. 2022 Dec 15;11(12):e0062922. doi: 10.1128/mra.00629-22. Epub 2022 Nov 7.
2
Draft Genome Sequence of the Lactococcus lactis 11/19-B1 Strain, Isolated from Kiwifruit.从猕猴桃中分离得到的乳酸乳球菌11/19-B1菌株的基因组序列草图
Microbiol Resour Announc. 2020 Sep 3;9(36):e00793-20. doi: 10.1128/MRA.00793-20.
3
Complete Genome Sequence of Lactococcus lactis subsp. lactis KLDS4.0325.乳酸乳球菌乳酸亚种KLDS4.0325的全基因组序列
Genome Announc. 2013 Nov 27;1(6):e00962-13. doi: 10.1128/genomeA.00962-13.
4
Draft Genome Sequence of Lactococcus lactis subsp. lactis bv. diacetylactis CRL264, a Citrate-Fermenting Strain.乳酸乳球菌乳酸亚种双乙酰乳酸变种CRL264（一株柠檬酸发酵菌株）的基因组序列草图
Genome Announc. 2016 Feb 4;4(1):e01575-15. doi: 10.1128/genomeA.01575-15.
5
Draft Genome Sequence of the Putrescine-Producing Strain Lactococcus lactis subsp. lactis 1AA59.产腐胺菌株乳酸乳球菌乳酸亚种1AA59的基因组序列草图
Genome Announc. 2015 Jun 18;3(3):e00669-15. doi: 10.1128/genomeA.00669-15.
6
Genome sequence of the New Zealand raw milk isolate and candidate probiotic strain FNZ339.新西兰生牛奶分离株及候选益生菌菌株FNZ339的基因组序列。
Microbiol Resour Announc. 2024 Nov 12;13(11):e0064824. doi: 10.1128/mra.00648-24. Epub 2024 Sep 30.
7
Complete Genome Sequence of Lactococcus lactis subsp. lactis A12, a Strain Isolated from Wheat Sourdough.乳酸乳球菌乳亚种A12的全基因组序列，该菌株从酸面圈中分离得到
Genome Announc. 2016 Sep 15;4(5):e00692-16. doi: 10.1128/genomeA.00692-16.
8
Genome Sequence of Lactococcus lactis subsp. lactis bv. diacetylactis LD61.乳酸乳球菌乳酸亚种双乙酰乳酸变种LD61的基因组序列
Genome Announc. 2014 Jan 16;2(1):e01176-13. doi: 10.1128/genomeA.01176-13.
9
Draft Genome Sequence of Lactococcus lactis subsp. lactis JCM 5805T, a Strain That Induces Plasmacytoid Dendritic Cell Activation.乳酸乳球菌乳酸亚种JCM 5805T的基因组序列草图，该菌株可诱导浆细胞样树突状细胞活化
Genome Announc. 2015 Mar 19;3(2):e00113-15. doi: 10.1128/genomeA.00113-15.
10
Adhesion of the genome-sequenced Lactococcus lactis subsp. cremoris IBB477 strain is mediated by specific molecular determinants.基因组测序的乳酸乳球菌乳脂亚种IBB477菌株的黏附作用由特定分子决定因素介导。
Appl Microbiol Biotechnol. 2016 Nov;100(22):9605-9617. doi: 10.1007/s00253-016-7813-0. Epub 2016 Sep 29.
本文引用的文献
1
Recovery of Pasteurization-Resistant from Seafoods Using a Modified, Two-Step Enrichment.采用改良两步富集法从海产品中回收耐巴氏杀菌菌。
Foods. 2022 Mar 7;11(5):764. doi: 10.3390/foods11050764.
2
Probiotics: Reiterating What They Are and What They Are Not.益生菌：重申其是什么以及不是什么。
Front Microbiol. 2019 Mar 12;10:424. doi: 10.3389/fmicb.2019.00424. eCollection 2019.
3
Isolation and Taxonomic Identity of Bacteriocin-Producing Lactic Acid Bacteria from Retail Foods and Animal Sources.从零售食品和动物源中分离产细菌素的乳酸菌及其分类鉴定
Microorganisms. 2015 Mar 19;3(1):80-93. doi: 10.3390/microorganisms3010080.
4
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
5
Bandage: interactive visualization of de novo genome assemblies.绷带：从头基因组组装的交互式可视化
Bioinformatics. 2015 Oct 15;31(20):3350-2. doi: 10.1093/bioinformatics/btv383. Epub 2015 Jun 22.
6
Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic：一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
7
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
8
Fast gapped-read alignment with Bowtie 2.快速缺口读对准与 Bowtie 2。
Nat Methods. 2012 Mar 4;9(4):357-9. doi: 10.1038/nmeth.1923.
9
Effects of milk-derived bioactives: an overview.乳源生物活性物质的作用：综述
Br J Nutr. 2000 Nov;84 Suppl 1:S3-10. doi: 10.1017/s000711450000218x.
10
Probiotic spectra of lactic acid bacteria (LAB).乳酸菌的益生菌谱
Crit Rev Food Sci Nutr. 1999 Jan;39(1):13-126. doi: 10.1080/10408699991279187.
Zotero 插件