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牙科临床记录的自然语言处理:一项系统综述。

Natural language processing for clinical notes in dentistry: A systematic review.

作者信息

Pethani Farhana, Dunn Adam G

机构信息

Biomedical Informatics and Digital Health, Faculty of Medicine and Health, the University of Sydney, Sydney, Australia.

Biomedical Informatics and Digital Health, Faculty of Medicine and Health, the University of Sydney, Sydney, Australia.

出版信息

J Biomed Inform. 2023 Feb;138:104282. doi: 10.1016/j.jbi.2023.104282. Epub 2023 Jan 7.

Abstract

OBJECTIVE

To identify and synthesise research on applications of natural language processing (NLP) for information extraction and retrieval from clinical notes in dentistry.

MATERIALS AND METHODS

A predefined search strategy was applied in EMBASE, CINAHL and Medline. Studies eligible for inclusion were those that that described, evaluated, or applied NLP to clinical notes containing either human or simulated patient information. Quality of the study design and reporting was independently assessed based on a set of questions derived from relevant tools including CHecklist for critical Appraisal and data extraction for systematic Reviews of prediction Modelling Studies (CHARMS). A narrative synthesis was conducted to present the results.

RESULTS

Of the 17 included studies, 10 developed and evaluated NLP methods and 7 described applications of NLP-based information retrieval methods in dental records. Studies were published between 2015 and 2021, most were missing key details needed for reproducibility, and there was no consistency in design or reporting. The 10 studies developing or evaluating NLP methods used document classification or entity extraction, and 4 compared NLP methods to non-NLP methods. The quality of reporting on NLP studies in dentistry has modestly improved over time.

CONCLUSIONS

Study design heterogeneity and incomplete reporting of studies currently limits our ability to synthesise NLP applications in dental records. Standardisation of reporting and improved connections between NLP methods and applied NLP in dentistry may improve how we can make use of clinical notes from dentistry in population health or decision support systems.

PROTOCOL REGISTRATION

PROSPERO CRD42021227823.

摘要

目的

识别并综合关于自然语言处理(NLP)在牙科临床记录信息提取和检索中的应用的研究。

材料与方法

在EMBASE、CINAHL和Medline中应用预定义的检索策略。纳入的研究是那些描述、评估或应用NLP于包含人类或模拟患者信息的临床记录的研究。基于包括预测建模研究系统评价的关键评估和数据提取核对清单(CHARMS)等相关工具衍生出的一组问题,对研究设计和报告的质量进行独立评估。进行叙述性综合以呈现结果。

结果

在纳入的17项研究中,10项开发并评估了NLP方法,7项描述了基于NLP的信息检索方法在牙科记录中的应用。研究发表于2015年至2021年之间,大多数缺少可重复性所需的关键细节,并且在设计或报告方面没有一致性。开发或评估NLP方法的10项研究使用了文档分类或实体提取,4项将NLP方法与非NLP方法进行了比较。牙科NLP研究的报告质量随着时间的推移有适度提高。

结论

研究设计的异质性和研究报告的不完整性目前限制了我们综合牙科记录中NLP应用的能力。报告的标准化以及牙科中NLP方法与应用NLP之间更好的联系可能会改善我们在人群健康或决策支持系统中利用牙科临床记录的方式。

方案注册

PROSPERO CRD42021227823。

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