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具有衰老特征的免疫途径改善了人类癌症的免疫治疗效果和药物预测

Immune Pathways with Aging Characteristics Improve Immunotherapy Benefits and Drug Prediction in Human Cancer.

作者信息

Wang Xinyue, Guo Shuang, Zhou Hanxiao, Sun Yue, Gan Jing, Zhang Yakun, Zheng Wen, Zhang Caiyu, Zhao Xiaoxi, Xiao Jiebin, Wang Li, Gao Yue, Ning Shangwei

机构信息

College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China.

出版信息

Cancers (Basel). 2023 Jan 4;15(2):342. doi: 10.3390/cancers15020342.

Abstract

(1) Background: Perturbation of immune-related pathways can make substantial contributions to cancer. However, whether and how the aging process affects immune-related pathways during tumorigenesis remains largely unexplored. (2) Methods: Here, we comprehensively investigated the immune-related genes and pathways among 25 cancer types using genomic and transcriptomic data. (3) Results: We identified several pathways that showed aging-related characteristics in various cancers, further validated by conventional aging-related gene sets. Genomic analysis revealed high mutation burdens in cytokines and cytokines receptors pathways, which were strongly correlated with aging in diverse cancers. Moreover, immune-related pathways were found to be favorable prognostic factors in melanoma. Furthermore, the expression level of these pathways had close associations with patient response to immune checkpoint blockade therapy in melanoma and non-small cell lung cancer. Applying a net-work-based method, we predicted immune- and aging-related genes in pan-cancer and utilized these genes for potential immunotherapy drug discovery. Mapping drug target data to our top-ranked genes identified potential drug targets, FYN, JUN, and SRC. (4) Conclusions: Taken together, our systematic study helped interpret the associations among immune-related pathways, aging, and cancer and could serve as a resource for promoting clinical treatment.

摘要

(1)背景:免疫相关通路的扰动对癌症有重大影响。然而,衰老过程在肿瘤发生过程中是否以及如何影响免疫相关通路在很大程度上仍未得到探索。(2)方法:在此,我们使用基因组和转录组数据全面研究了25种癌症类型中的免疫相关基因和通路。(3)结果:我们鉴定出了几种在各种癌症中表现出与衰老相关特征的通路,并通过传统的衰老相关基因集进一步验证。基因组分析揭示了细胞因子和细胞因子受体通路中的高突变负担,这在多种癌症中与衰老密切相关。此外发现免疫相关通路是黑色素瘤的有利预后因素。此外,这些通路的表达水平与黑色素瘤和非小细胞肺癌患者对免疫检查点阻断疗法的反应密切相关。应用基于网络的方法,我们预测了泛癌中免疫和衰老相关基因,并利用这些基因进行潜在免疫治疗药物的发现。将药物靶点数据映射到我们排名靠前的基因上,确定了潜在的药物靶点FYN、JUN和SRC。(4)结论:综上所述,我们的系统研究有助于解释免疫相关通路、衰老和癌症之间的关联,并可作为促进临床治疗的资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/416d/9856581/e2f5acdb0dea/cancers-15-00342-g001.jpg

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