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SARS-CoV-2 的进化轨迹:宿主免疫作为 RNA 病毒适应性的驱动因素。

On the Evolutionary Trajectory of SARS-CoV-2: Host Immunity as a Driver of Adaptation in RNA Viruses.

机构信息

School of Medicine and Pharmacology, University of Western Australia, Crawley, WA 6009, Australia.

School of Human Sciences, University of Western Australia, Crawley, WA 6009, Australia.

出版信息

Viruses. 2022 Dec 26;15(1):70. doi: 10.3390/v15010070.


DOI:10.3390/v15010070
PMID:36680110
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9866609/
Abstract

Host immunity can exert a complex array of selective pressures on a pathogen, which can drive highly mutable RNA viruses towards viral escape. The plasticity of a virus depends on its rate of mutation, as well as the balance of fitness cost and benefit of mutations, including viral adaptations to the host's immune response. Since its emergence, SARS-CoV-2 has diversified into genetically distinct variants, which are characterised often by clusters of mutations that bolster its capacity to escape human innate and adaptive immunity. Such viral escape is well documented in the context of other pandemic RNA viruses such as the human immunodeficiency virus (HIV) and influenza virus. This review describes the selection pressures the host's antiviral immunity exerts on SARS-CoV-2 and other RNA viruses, resulting in divergence of viral strains into more adapted forms. As RNA viruses obscure themselves from host immunity, they uncover weak points in their own armoury that can inform more comprehensive, long-lasting, and potentially cross-protective vaccine coverage.

摘要

宿主免疫可以对病原体施加一系列复杂的选择压力,这可能导致高度易变的 RNA 病毒发生病毒逃逸。病毒的可塑性取决于其突变率,以及突变的适应性成本和收益之间的平衡,包括病毒对宿主免疫反应的适应。自出现以来,SARS-CoV-2 已经多样化为具有遗传差异的变体,其特征通常是簇状突变,这些突变增强了其逃避人类先天和适应性免疫的能力。在人类免疫缺陷病毒 (HIV) 和流感病毒等其他大流行 RNA 病毒的背景下,这种病毒逃逸已得到充分证实。本文描述了宿主抗病毒免疫对 SARS-CoV-2 和其他 RNA 病毒施加的选择压力,导致病毒株向更适应的形式分化。随着 RNA 病毒使自身逃避宿主免疫,它们会暴露出自身防御体系中的弱点,这可以为更全面、更持久、具有潜在交叉保护作用的疫苗覆盖提供信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f539/9866609/9fa0aca51f64/viruses-15-00070-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f539/9866609/9fa0aca51f64/viruses-15-00070-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f539/9866609/9fa0aca51f64/viruses-15-00070-g001.jpg

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本文引用的文献

[1]
Impact of SARS-CoV-2 ORF6 and its variant polymorphisms on host responses and viral pathogenesis.

Cell Host Microbe. 2023-10-11

[2]
Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection.

Cell Rep Med. 2023-2-21

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Global estimates of the fitness advantage of SARS-CoV-2 variant Omicron.

Virus Evol. 2022-10-7

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Evasion of cGAS and TRIM5 defines pandemic HIV.

Nat Microbiol. 2022-11

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SARS-CoV-2 variants Alpha, Beta, Delta and Omicron show a slower host cell interferon response compared to an early pandemic variant.

Front Immunol. 2022

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NSP4 and ORF9b of SARS-CoV-2 Induce Pro-Inflammatory Mitochondrial DNA Release in Inner Membrane-Derived Vesicles.

Cells. 2022-9-23

[7]
Insights into pandemic respiratory viruses: manipulation of the antiviral interferon response by SARS-CoV-2 and influenza A virus.

Curr Opin Immunol. 2022-10

[8]
Altered subgenomic RNA abundance provides unique insight into SARS-CoV-2 B.1.1.7/Alpha variant infections.

Commun Biol. 2022-7-5

[9]
Ongoing Positive Selection Drives the Evolution of SARS-CoV-2 Genomes.

Genomics Proteomics Bioinformatics. 2022-12

[10]
Drivers of adaptive evolution during chronic SARS-CoV-2 infections.

Nat Med. 2022-7

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