Department of Soil and Crop Sciences, Texas A&M University, College Station, TX, United States of America.
Department of Horticulture, University of Wisconsin, Madison, Wisconsin, United States of America.
PLoS One. 2023 Jan 26;18(1):e0277804. doi: 10.1371/journal.pone.0277804. eCollection 2023.
Unoccupied aerial systems (UAS) based high throughput phenotyping studies require further investigation to combine different environments and planting times into one model. Here 100 elite breeding hybrids of maize (Zea mays L.) were evaluated in two environment trials-one with optimal planting and irrigation (IHOT), and one dryland with delayed planting (DHOT). RGB (Red-Green-Blue) based canopy height measurement (CHM) and vegetation indices (VIs) were estimated from a UAS platform. Time series and cumulative VIs, by both summation (ΣVI-SUMs) and area under the curve (ΣVI-AUCs), were fit via machine learning regression modeling (random forest, linear, ridge, lasso, elastic net regressions) to estimate grain yield. VIs were more valuable predictors of yield to combine different environments than CHM. Time series VIs and CHM produced high accuracies (68-72%), but inconsistent models. A little sacrifice in accuracy (60-65%) produced consistent models using ΣVI-SUMs and CHM during pre-reproductive vegetative growth. Absence of VIs produced poorer accuracies (by about ~5-10%). Normalized difference type VIs produced maximum accuracies, and flowering times were the best times for UAS data acquisition. This study suggests that the best yielding varieties can be accurately predicted in new environments at or before flowering when combining multiple temporal flights and predictors.
基于无人航空系统(UAS)的高通量表型研究需要进一步研究,以便将不同的环境和种植时间结合到一个模型中。在这里,100 个玉米(Zea mays L.)精英杂交种在两个环境试验中进行了评估 - 一个是具有最佳种植和灌溉条件的(IHOT),另一个是旱地延迟种植的(DHOT)。基于 RGB(红-绿-蓝)的冠层高度测量(CHM)和植被指数(VIs)是从 UAS 平台估算的。通过机器学习回归建模(随机森林、线性、岭、套索、弹性网回归)对时间序列和累积 VIs(ΣVI-SUMs 和 ΣVI-AUCs)进行拟合,以估计籽粒产量。与 CHM 相比,VIs 更能预测不同环境下的产量。时间序列 VIs 和 CHM 产生了较高的精度(约 68-72%),但模型不一致。在生殖生长前的营养生长阶段,通过ΣVI-SUMs 和 CHM 稍微牺牲一些精度(约 60-65%)可以产生一致的模型。没有 VIs 会产生较差的精度(约低 5-10%)。归一化差异类型 VIs 产生了最高的精度,开花期是 UAS 数据采集的最佳时间。本研究表明,当结合多个时间飞行和预测因子时,可以在开花期之前或开花期在新环境中准确预测产量最高的品种。