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通过一个在家进行的酵母实验进化教学实验室筛选出的咖啡因耐受性突变。

Caffeine-tolerant mutations selected through an at-home yeast experimental evolution teaching lab.

作者信息

Moresi Naomi G, Geck Renee C, Skophammer Ryan, Godin Dennis, Taylor M Bryce, Dunham Maitreya J

机构信息

Department of Genome Sciences, University of Washington, Seattle, WA 98195.

Westridge School, Pasadena, CA 91105.

出版信息

bioRxiv. 2023 Jan 20:2023.01.17.524437. doi: 10.1101/2023.01.17.524437.

DOI:10.1101/2023.01.17.524437
PMID:36712001
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9882195/
Abstract

yEvo is a curriculum for high school students centered around evolution experiments in . To adapt the curriculum for remote instruction, we created a new protocol to evolve non-GMO yeast in the presence of caffeine. Evolved strains had increased caffeine tolerance and distinct colony morphologies. Many possessed copy number variations, transposon insertions, and mutations affecting genes with known relationships to caffeine and TOR signaling - which is inhibited by caffeine - and in other genes not previously connected with caffeine. This demonstrates that our accessible, at-home protocol is sufficient to permit novel insights into caffeine tolerance.

摘要

yEvo是一门面向高中生的课程,围绕[具体地点]的进化实验展开。为了使该课程适用于远程教学,我们创建了一种新方案,让非转基因酵母在咖啡因存在的情况下进化。进化后的菌株对咖啡因的耐受性增强,菌落形态也有所不同。许多菌株存在拷贝数变异、转座子插入以及影响与咖啡因和TOR信号通路(该信号通路会被咖啡因抑制)具有已知关系的基因的突变,还有一些突变发生在之前与咖啡因没有关联的其他基因中。这表明我们这种便于在家操作的方案足以让我们对咖啡因耐受性有新的认识。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f92e/9882195/412a52793518/nihpp-2023.01.17.524437v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f92e/9882195/412a52793518/nihpp-2023.01.17.524437v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f92e/9882195/412a52793518/nihpp-2023.01.17.524437v1-f0001.jpg

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本文引用的文献

1
yEvo: A modular eukaryotic genetics and evolution research experience for high school students.yEvo:面向高中生的模块化真核生物遗传学与进化研究体验项目。
Ecol Evol. 2024 Jan 7;14(1):e10811. doi: 10.1002/ece3.10811. eCollection 2024 Jan.
2
yEvo: experimental evolution in high school classrooms selects for novel mutations that impact clotrimazole resistance in Saccharomyces cerevisiae.yEvo:高中课堂中的实验进化选择了影响酿酒酵母克霉唑抗性的新突变。
G3 (Bethesda). 2022 Nov 4;12(11). doi: 10.1093/g3journal/jkac246.
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CURE in a Box: an Online CURE for Introductory Biology Majors That Incorporates Vision and Change.
盒中实验:面向生物学专业新生的在线实验,融合了《愿景与变革》理念。
J Microbiol Biol Educ. 2021 Mar 31;22(1). doi: 10.1128/jmbe.v22i1.2325. eCollection 2021.
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Indole-3-acetic acid is a physiological inhibitor of TORC1 in yeast.吲哚-3-乙酸是酵母中 TORC1 的生理抑制剂。
PLoS Genet. 2021 Mar 9;17(3):e1009414. doi: 10.1371/journal.pgen.1009414. eCollection 2021 Mar.
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Conserved and Divergent Mechanisms That Control TORC1 in Yeasts and Mammals.酵母和哺乳动物中控制 TORC1 的保守和分歧机制。
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and Caffeine Implications on the Eukaryotic Cell.并且咖啡因对真核细胞的影响。
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Mislocalization of TORC1 to Lysosomes Caused by KIF11 Inhibition Leads to Aberrant TORC1 Activity.KIF11 抑制导致 TORC1 向溶酶体的定位错误,从而导致异常的 TORC1 活性。
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Evolutionary engineering and molecular characterization of a caffeine-resistant Saccharomyces cerevisiae strain.进化工程与咖啡因耐受酿酒酵母菌株的分子特征分析。
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TORC1 specifically inhibits microautophagy through ESCRT-0.TORC1 通过 ESCRT-0 特异性抑制微自噬。
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