Cerchia Carmen, Lavecchia Antonio
Drug Discovery Laboratory, Department of Pharmacy, University of Naples Federico II, I-80131 Naples, Italy.
Drug Discovery Laboratory, Department of Pharmacy, University of Naples Federico II, I-80131 Naples, Italy.
Drug Discov Today. 2023 Apr;28(4):103516. doi: 10.1016/j.drudis.2023.103516. Epub 2023 Feb 2.
Over the past decade, the amount of biomedical data available has grown at unprecedented rates. Increased automation technology and larger data volumes have encouraged the use of machine learning (ML) or artificial intelligence (AI) techniques for mining such data and extracting useful patterns. Because the identification of chemical entities with desired biological activity is a crucial task in drug discovery, AI technologies have the potential to accelerate this process and support decision making. In addition, the advent of deep learning (DL) has shown great promise in addressing diverse problems in drug discovery, such as de novo molecular design. Herein, we will appraise the current state-of-the-art in AI-assisted drug discovery, discussing the recent applications covering generative models for chemical structure generation, scoring functions to improve binding affinity and pose prediction, and molecular dynamics to assist in the parametrization, featurization and generalization tasks. Finally, we will discuss current hurdles and the strategies to overcome them, as well as potential future directions.
在过去十年中,可用的生物医学数据量以前所未有的速度增长。自动化技术的提高和数据量的增大,促使人们使用机器学习(ML)或人工智能(AI)技术来挖掘此类数据并提取有用模式。由于识别具有所需生物活性的化学实体是药物发现中的一项关键任务,因此人工智能技术有潜力加速这一过程并支持决策制定。此外,深度学习(DL)的出现已在解决药物发现中的各种问题(如从头分子设计)方面显示出巨大前景。在此,我们将评估人工智能辅助药物发现的当前技术水平,讨论最近的应用,包括用于化学结构生成的生成模型、用于提高结合亲和力和构象预测的评分函数,以及用于辅助参数化、特征化和泛化任务的分子动力学。最后,我们将讨论当前的障碍及其克服策略,以及潜在的未来发展方向。