Department of Animal Medicine, Production and Health (MAPS), Padua University, 35020, Legnaro, Italy.
Departament de Sanitat i Anatomia Animals, Facultat de Veterinària, Universitat Autònoma de Barcelona, 08193, Bellaterra, Spain.
Virol J. 2023 Feb 9;20(1):26. doi: 10.1186/s12985-023-01984-6.
The continuous discovery of new viruses during the last decades has increased the need for new classification approaches and rules. Currently, the International Committee on Taxonomy of Viruses classifies viruses up to the species level. However, because of the higher variability of most of these infectious agents, a below-species categorization is often required for proper epidemiological investigations. Unfortunately, variable criteria are typically proposed by different research groups, leading to misleading and poorly reproducible results. This scenario occurred for the recently identified Porcine circovirus 3. Although genotype definition standards had been defined by a group of experts in the field, recent articles have been published introducing new genotypes, whose classification rules are not reported. We therefore would like to stress the usefulness of defining and maintaining a common language to allow proper results comparison among groups. We consider the consensus opinion of a heterogeneous expert team as the most valuable approach. Nevertheless, if other approaches are proposed, the disclosure of the criteria and the comparison with previous literature should be deemed mandatory to allow effective results reproducibility, interpretation and sharing.
在过去的几十年中,不断发现新的病毒,这增加了对新的分类方法和规则的需求。目前,国际病毒分类委员会将病毒分类到物种水平。然而,由于大多数这些传染性病原体的更高变异性,通常需要低于物种的分类来进行适当的流行病学调查。不幸的是,不同的研究小组通常提出可变的标准,导致误导性和可重复性差的结果。这种情况发生在最近鉴定的猪圆环病毒 3 上。尽管该领域的一组专家已经定义了基因型定义标准,但最近已经发表了一些介绍新基因型的文章,但其分类规则并未报道。因此,我们想强调定义和维护通用语言的有用性,以允许组之间进行适当的结果比较。我们认为异质专家组的共识意见是最有价值的方法。然而,如果提出其他方法,则应强制披露标准,并与以前的文献进行比较,以允许有效重现、解释和共享结果。