State Key Laboratory of Tree Genetics and Breeding, College of Forestry, Northeast Forestry University, Harbin 150040, China.
Jilin Provincial Key Laboratory of Tree and Grass Genetics and Breeding, College of Forestry and Grassland Science, Jilin Agricultural University, Changchun 130118, China.
Int J Mol Sci. 2023 Jan 20;24(3):2088. doi: 10.3390/ijms24032088.
The C-Repeat Binding Factor () gene family has been identified and characterized in multiple plant species, and it plays a crucial role in responding to low temperatures. Presently, only a few studies on tree species demonstrate the mechanisms and potential functions of associated with cold resistance, while our study is a novel report on the multi-aspect differences of among three tree species, compared to previous studies. In this study, genome-wide identification and analysis of the gene family in , , and were performed. The results revealed that 16 genes (five , four , and seven ) were unevenly distributed across the chromosomes, and most genes were mapped on chromosome 2 (Chr2) and chromosome 11 (Chr11). The analysis of phylogenetic relationships, gene structure, and conserved motif showed that 16 genes could be clustered into three subgroups; they all contained Motif 1 and Motif 5, and most of them only spanned one exon. The cis-acting elements analysis showed that some genes might be involved in hormone and abiotic stress responsiveness. In addition, genes exhibited tissue expression specificity. High expressions of , , , , , and , , were detected on exposure to low temperature for 3 h and 24 h. Low expressions of , , were detected under cold stress for 24 h, and and were always down-regulated under cold conditions. Taken together, comprehensive analysis will enhance our understanding of the potential functions of the genes on cold resistance, thereby providing a reference for the introduction of species in our country.
C-重复结合因子()基因家族已在多种植物物种中被鉴定和描述,它在响应低温方面起着至关重要的作用。目前,只有少数关于树种的研究表明与抗寒性相关的 的机制和潜在功能,而我们的研究是对三种树种中 的多方面差异的一项新的报告,与之前的研究相比。在这项研究中,对 、 和 中的 基因家族进行了全基因组鉴定和分析。结果表明,16 个基因(5 个 、4 个 和 7 个 )不均匀地分布在染色体上,大多数 基因位于第 2 号染色体(Chr2)和第 11 号染色体(Chr11)上。系统发育关系、基因结构和保守基序分析表明,16 个基因可以分为三个亚组;它们都包含基序 1 和基序 5,并且大多数只跨越一个外显子。顺式作用元件分析表明,一些 基因可能参与激素和非生物胁迫响应。此外, 基因表现出组织表达特异性。在低温处理 3 h 和 24 h 后,检测到 、 、 、 、 、 、 、 、 、 、 和 的高表达。在 24 h 冷胁迫下,检测到 、 和 的低表达,而 和 在低温条件下总是下调。综上所述,综合分析将增强我们对 基因在抗寒性方面的潜在功能的理解,从而为我国 物种的引种提供参考。