State Key Laboratory of Tree Genetics and Breeding, School of Forestry, Northeast Forestry University, Harbin 150040, China.
College of Forestry and Grassland, Jilin Agricultural University, Changchun 130118, China.
Int J Mol Sci. 2021 Nov 17;22(22):12414. doi: 10.3390/ijms222212414.
The NAC (NAM, ATAF and CUC) gene family plays a crucial role in the transcriptional regulation of various biological processes and has been identified and characterized in multiple plant species. However, genome-wide identification of this gene family has not been implemented in , and specific functions of these genes in the development of fruits remain unknown. In this study, we performed genome-wide identification and functional analysis of the NAC gene family during fruit development and identified a total of 114 genes in the genome. Chromosomal location analysis revealed that genes were unevenly distributed in 16 chromosomes; the highest numbers were found in chromosomes 2 and 4. Furthermore, according to the homologues of genes in , a phylogenetic tree was constructed, and the results demonstrated 114 genes, which were divided into eight subgroups. Four gene pairs were identified as the result of tandem duplicates. Tissue-specific analysis of genes during different developmental stages revealed that 39 and 25 genes exhibited upregulation during the mature stage in walnut exocarp and embryos, indicating that they may serve key functions in fruit development. Furthermore, 12 upregulated genes were common in fruit ripening stage in walnut exocarp and embryos, which demonstrated that these genes were positively correlated with fruit development in . This study provides new insights into the regulatory functions of genes during fruit development in , thereby improving the understanding of characteristics and evolution of the gene family.
NAC(NAM、ATAF 和 CUC)基因家族在各种生物过程的转录调控中发挥着关键作用,已在多种植物物种中被鉴定和描述。然而,在 中尚未进行该基因家族的全基因组鉴定,这些基因在果实发育中的具体功能仍不清楚。在这项研究中,我们对 中果实发育过程中的 NAC 基因家族进行了全基因组鉴定和功能分析,共鉴定出 个基因。染色体定位分析表明, 个基因在 16 条染色体上不均匀分布;其中在染色体 2 和 4 上数量最多。此外,根据 中 基因的同源物,构建了一个系统发育树,结果表明 个基因被分为 8 个亚组。鉴定出 4 对串联重复的 基因。不同发育阶段 基因的组织特异性分析表明,在核桃外果皮和胚成熟阶段有 39 个和 25 个 基因上调表达,表明它们可能在果实发育中发挥关键功能。此外,在核桃外果皮和胚的果实成熟阶段有 12 个上调的 基因是共同的,这表明这些基因与 中的果实发育呈正相关。本研究为 中 基因在果实发育过程中的调控功能提供了新的见解,从而提高了对该基因家族特征和进化的理解。