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ST141克隆群的基因型特征及抗菌药物耐药性

Genotypic Characteristics and Antimicrobial Resistance of ST141 Clonal Group.

作者信息

Emery Audrey, Hocquet Didier, Bonnet Richard, Bertrand Xavier

机构信息

Hygiène Hospitalière, CHU, 25030 Besançon, France.

Bactériologie, CHU Nice, 06202 Nice, France.

出版信息

Antibiotics (Basel). 2023 Feb 13;12(2):382. doi: 10.3390/antibiotics12020382.

Abstract

ST141 is one of the ExPEC lineages whose incidence is rising in France, even if no epidemic situation involving multidrug resistant isolates has been reported so far. Nonetheless, in a 2015-2017 monocentric study conducted in our French University hospital, ST141 was the most frequent lineage after ST131 in our collection of phylogroup B2 ESBL-producing . The genomes of 187 isolates representing ST141 group, including 170 genomes from public databases and 17 from our local collection, of which 13 produced ESBL, were analyzed to infer the maximum likelihood phylogeny SNP-based (Single Nucleotide Polymorphism) free-recombinant tree defining the ST141 population structure. Genomes were screened for genes encoding virulence factors (VFs) and antimicrobial resistance (AMR). We also evaluated the distribution of isolates according to their origin (host, disease, country) and the distribution of VFs or AMR genes. Finally, the phylogenic tree revealed that ST141 isolates clustered into two main sublineages, with low genetic diversity. Contrasting with a highly virulent profile, as many isolates accumulated VFs, the prevalence of AMR was limited, with no evidence of multidrug resistant emerging lineage. However, our results suggest that surveillance of this clonal group, which has the potential to spread widely in the community, would be essential.

摘要

ST141是法国发病率正在上升的肠外致病性大肠杆菌(ExPEC)谱系之一,尽管目前尚未报告涉及多重耐药菌株的疫情。尽管如此,在我们法国大学医院于2015年至2017年进行的一项单中心研究中,在我们收集的产超广谱β-内酰胺酶(ESBL)的B2系统发育群中,ST141是仅次于ST131的最常见谱系。对代表ST141组的187株分离株的基因组进行了分析,以推断基于单核苷酸多态性(SNP)的无重组最大似然系统发育树,从而确定ST141的群体结构,其中包括来自公共数据库的170个基因组和我们本地收集的17个基因组,其中13个产生ESBL。对基因组进行筛选,以寻找编码毒力因子(VF)和抗菌抗性(AMR)的基因。我们还根据分离株的来源(宿主、疾病、国家)以及VF或AMR基因的分布评估了分离株的分布情况。最后,系统发育树显示,ST141分离株聚为两个主要亚谱系,遗传多样性较低。与高毒力特征形成对比的是,许多分离株积累了VF,但AMR的流行率有限,没有出现多重耐药新谱系的证据。然而,我们 的结果表明,对这个有可能在社区中广泛传播的克隆群体进行监测至关重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7aef/9952247/1ffcf785b6df/antibiotics-12-00382-g003.jpg

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