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解析洋葱的抗炎机制:网络药理学和分子对接方法的整合。

Unravelling the anti-inflammatory mechanism of Allium cepa: an integration of network pharmacology and molecular docking approaches.

机构信息

Department of Biochemistry, School of Life Sciences (SLS), Federal University of Technology Akure, P.M.B 704, Akure, Nigeria.

Computer-Aided Therapeutics Laboratory (CATL), Federal University of Technology Akure, P.M.B 704, Akure, Nigeria.

出版信息

Mol Divers. 2024 Apr;28(2):727-747. doi: 10.1007/s11030-023-10614-w. Epub 2023 Mar 3.

DOI:10.1007/s11030-023-10614-w
PMID:36867320
Abstract

Allium cepa, commonly known as onion, is a widely consumed spice that possesses numerous pharmacological properties. A. cepa bioactive components are often explored in the treatment of inflammation-related complications. However, the molecular mechanism via which they exert their anti-inflammatory effects remains unknown. Therefore, this study aimed to elucidate the anti-inflammatory mechanism of A. cepa bioactive components. Consequently, the bioactive compounds of A. cepa were obtained from a database, while the potential targets of the sixty-nine compounds with desirable pharmacokinetic properties were predicted. Subsequently, the targets of inflammation were acquired from the GeneCards database. The protein-protein interaction (PPI) between the sixty-six shared targets of the bioactive compounds and inflammation was retrieved from the String database and visualized using Cytoscape v3.9.1 software. Gene Ontology (GO) analysis of the ten core targets from the PPI network revealed that A. cepa bioactive compounds could be involved in regulating biological processes such as response to oxygen-containing compounds and response to inflammation while Kyoto Encyclopaedia of Genes and Genomes (KEGG) analysis revealed that A. cepa compounds might modulate pathways including AGE-RAGE signaling pathway, interleukin (IL)-17 signalling pathway, and tumor necrosis factor signaling pathway. Molecular docking analysis showed that 1-O-(4-Coumaroyl)-beta-D-glucose, stigmasterol, campesterol, and diosgenin have high binding affinities for core targets including EGFR, ALB, MMP9, CASP3, and CCL5. This study successfully elucidated the potential anti-inflammatory mechanism of A. cepa bioactive compounds, hence, providing new insights into the development of alternative anti-inflammatory drugs.

摘要

洋葱,通常被称为洋葱,是一种广泛食用的香料,具有许多药理特性。A. cepa 生物活性成分常用于治疗与炎症相关的并发症。然而,其发挥抗炎作用的分子机制尚不清楚。因此,本研究旨在阐明 A. cepa 生物活性成分的抗炎机制。因此,从数据库中获得了 A. cepa 的生物活性化合物,同时预测了具有良好药代动力学特性的六十九种化合物的潜在靶点。随后,从 GeneCards 数据库中获得了炎症的靶点。从 String 数据库中检索到生物活性化合物和炎症的 66 个共享靶点之间的蛋白质-蛋白质相互作用 (PPI),并使用 Cytoscape v3.9.1 软件进行可视化。PPI 网络中的十个核心靶点的基因本体 (GO) 分析表明,A. cepa 生物活性化合物可能参与调节生物过程,如对含氧量化合物的反应和对炎症的反应,而京都基因与基因组百科全书 (KEGG) 分析表明,A. cepa 化合物可能调节包括 AGE-RAGE 信号通路、白细胞介素 (IL)-17 信号通路和肿瘤坏死因子信号通路在内的途径。分子对接分析表明,1-O-(4-香豆酰基)-β-D-葡萄糖、豆甾醇、菜油甾醇和薯蓣皂苷元对 EGFR、ALB、MMP9、CASP3 和 CCL5 等核心靶点具有较高的结合亲和力。本研究成功阐明了 A. cepa 生物活性化合物的潜在抗炎机制,为开发替代抗炎药物提供了新的思路。

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