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碱基编辑应用的当前进展。

Current advancement in the application of prime editing.

作者信息

Huang Zhangrao, Liu Gang

机构信息

State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China.

University of Chinese Academy of Sciences, Beijing, China.

出版信息

Front Bioeng Biotechnol. 2023 Feb 16;11:1039315. doi: 10.3389/fbioe.2023.1039315. eCollection 2023.

DOI:10.3389/fbioe.2023.1039315
PMID:36873365
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9978821/
Abstract

Prime editing (PE) is a precise genome manipulation technology based on the "search and replace" approach of the CRISPR-Cas9 system, while it does not require the exogenous donor DNA and the DNA double-strand breaks (DSBs). Comparing the base editing technology, the editing scope of prime editing has been widely expanded. Prime editing has been successfully applied in a variety of plant cells, animal cells and the model microorganism so far, and it has shown a good application potential in breeding and genomic functional study of animals and plants, disease treatment, and modification of the microbial strains. In this paper, the basic strategies of prime editing are briefly described, and its research progress is summarized and prospected from the application of multiple species. In addition, a variety of optimization strategies for improving its efficiency and specificity of prime editing are outlined.

摘要

碱基编辑(PE)是一种基于CRISPR-Cas9系统“搜索并替换”方法的精确基因组操作技术,同时它不需要外源供体DNA和DNA双链断裂(DSBs)。与碱基编辑技术相比,碱基编辑的编辑范围已得到广泛扩展。到目前为止,碱基编辑已成功应用于多种植物细胞、动物细胞和模式微生物中,并且在动植物育种和基因组功能研究、疾病治疗以及微生物菌株改造方面显示出良好的应用潜力。本文简要描述了碱基编辑的基本策略,并从多种物种的应用方面总结和展望了其研究进展。此外,还概述了提高碱基编辑效率和特异性的多种优化策略。

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Current advancement in the application of prime editing.碱基编辑应用的当前进展。
Front Bioeng Biotechnol. 2023 Feb 16;11:1039315. doi: 10.3389/fbioe.2023.1039315. eCollection 2023.
2
[Plant prime editing technique: a new genome editing tool for plants].[植物碱基编辑技术:一种用于植物的新型基因组编辑工具]
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A design optimized prime editor with expanded scope and capability in plants.在植物中具有扩展范围和功能的优化设计的先导编辑器。
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本文引用的文献

1
Prime editing for precise and highly versatile genome manipulation.碱基编辑技术实现精准且多功能的基因组编辑。
Nat Rev Genet. 2023 Mar;24(3):161-177. doi: 10.1038/s41576-022-00541-1. Epub 2022 Nov 7.
2
Engineered CRISPR prime editors with compact, untethered reverse transcriptases.工程化的 CRISPR 引物编辑器,具有紧凑、无束缚的逆转录酶。
Nat Biotechnol. 2023 Mar;41(3):337-343. doi: 10.1038/s41587-022-01473-1. Epub 2022 Sep 26.
3
Optimized prime editing efficiently generates glyphosate-resistant rice plants carrying homozygous TAP-IVS mutation in EPSPS.
玉米和高粱中的基因组编辑:CRISPR/Cas9及新兴技术的全面综述
Plant Genome. 2025 Jun;18(2):e70038. doi: 10.1002/tpg2.70038.
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Emerging applications of gene editing technologies for the development of climate-resilient crops.基因编辑技术在培育气候适应型作物方面的新兴应用。
Front Genome Ed. 2025 Mar 10;7:1524767. doi: 10.3389/fgeed.2025.1524767. eCollection 2025.
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Groundbreaking Technologies and the Biocontrol of Fungal Vascular Plant Pathogens.突破性技术与真菌维管束植物病原体的生物防治
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6
Optimized Prime Editing of Human Induced Pluripotent Stem Cells to Efficiently Generate Isogenic Models of Mendelian Diseases.优化人类诱导多能干细胞的碱基编辑以有效生成孟德尔疾病的同基因模型。
Int J Mol Sci. 2024 Dec 26;26(1):114. doi: 10.3390/ijms26010114.
7
Advances and applications of CRISPR/Cas-mediated interference in .CRISPR/Cas介导的干扰在……中的进展与应用
Eng Microbiol. 2023 Nov 2;4(1):100123. doi: 10.1016/j.engmic.2023.100123. eCollection 2024 Mar.
8
Reporter Alleles in hiPSCs: Visual Cues on Development and Disease.Reporter 人诱导多能干细胞中的等位基因:发育和疾病的视觉线索。
Int J Mol Sci. 2024 Oct 13;25(20):11009. doi: 10.3390/ijms252011009.
9
Emerging Perspectives on Prime Editor Delivery to the Brain.向大脑递送碱基编辑器的新观点
Pharmaceuticals (Basel). 2024 Jun 11;17(6):763. doi: 10.3390/ph17060763.
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Progress and pitfalls of gene editing technology in CAR-T cell therapy: a state-of-the-art review.嵌合抗原受体T细胞(CAR-T)疗法中基因编辑技术的进展与陷阱:最新综述
Front Oncol. 2024 Jun 7;14:1388475. doi: 10.3389/fonc.2024.1388475. eCollection 2024.
优化的碱基编辑有效地产生了在5-烯醇丙酮酰莽草酸-3-磷酸合酶(EPSPS)中携带纯合TAP-IVS突变的抗草甘膦水稻植株。
Mol Plant. 2022 Nov 7;15(11):1646-1649. doi: 10.1016/j.molp.2022.09.006. Epub 2022 Sep 13.
4
Prime Editing: An All-Rounder for Genome Editing.碱基编辑:基因组编辑的多面手。
Int J Mol Sci. 2022 Aug 30;23(17):9862. doi: 10.3390/ijms23179862.
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Designing and executing prime editing experiments in mammalian cells.在哺乳动物细胞中设计和执行先导编辑实验。
Nat Protoc. 2022 Nov;17(11):2431-2468. doi: 10.1038/s41596-022-00724-4. Epub 2022 Aug 8.
6
The potential of CRISPR-Cas9 prime editing for cardiovascular disease research and therapy.CRISPR-Cas9 先导编辑在心血管疾病研究和治疗中的潜力。
Curr Opin Cardiol. 2022 Sep 1;37(5):413-418. doi: 10.1097/HCO.0000000000000985. Epub 2022 Jul 16.
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Automated design of CRISPR prime editors for 56,000 human pathogenic variants.针对56000种人类致病变体的CRISPR碱基编辑器的自动化设计。
iScience. 2021 Oct 30;24(11):103380. doi: 10.1016/j.isci.2021.103380. eCollection 2021 Nov 19.
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Therapeutic in vivo delivery of gene editing agents.基因编辑试剂的治疗性体内递送。
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Bi-PE: bi-directional priming improves CRISPR/Cas9 prime editing in mammalian cells.双引物增强(Bi-PE):双向引物增强提高了哺乳动物细胞中的 CRISPR/Cas9 先导编辑。
Nucleic Acids Res. 2022 Jun 24;50(11):6423-6434. doi: 10.1093/nar/gkac506.