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高产和低产本地品种中脂肪QTL基因的非同义变异

Non-Synonymous Variants in Fat QTL Genes among High- and Low-Milk-Yielding Indigenous Breeds.

作者信息

Topno Neelam A, Kesarwani Veerbhan, Kushwaha Sandeep Kumar, Azam Sarwar, Kadivella Mohammad, Gandham Ravi Kumar, Majumdar Subeer S

机构信息

DBT-National Institute of Animal Biotechnology (NIAB), Hyderabad 500032, India.

RCB-Regional Centre of Biotechnology, Delhi 121001, India.

出版信息

Animals (Basel). 2023 Feb 28;13(5):884. doi: 10.3390/ani13050884.

DOI:10.3390/ani13050884
PMID:36899741
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10000039/
Abstract

The effect of breed on milk components-fat, protein, lactose, and water-has been observed to be significant. As fat is one of the major price-determining factors for milk, exploring the variations in fat QTLs across breeds would shed light on the variable fat content in their milk. Here, on whole-genome sequencing, 25 differentially expressed hub or bottleneck fat QTLs were explored for variations across indigenous breeds. Out of these, 20 genes were identified as having nonsynonymous substitutions. A fixed SNP pattern in high-milk-yielding breeds in comparison to low-milk-yielding breeds was identified in the genes and and, vice versa, in the genes , and . The identified SNPs were ratified by pyrosequencing to prove that key differences exist in fat QTLs between the high- and low-milk-yielding breeds.

摘要

品种对牛奶成分(脂肪、蛋白质、乳糖和水)的影响已被观察到是显著的。由于脂肪是牛奶主要的价格决定因素之一,探索不同品种间脂肪数量性状基因座(QTL)的变异将有助于了解它们牛奶中脂肪含量的差异。在此,通过全基因组测序,研究了25个差异表达的核心或瓶颈脂肪QTL在本土品种间的变异情况。其中,有20个基因被鉴定出存在非同义替换。在基因 和 中,与低产奶量品种相比,高产奶量品种中鉴定出了一种固定的单核苷酸多态性(SNP)模式,反之,在基因 、 和 中情况则相反。通过焦磷酸测序验证了所鉴定的SNP,以证明高产奶量和低产奶量品种在脂肪QTL上存在关键差异。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15de/10000039/b34b74078bf1/animals-13-00884-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15de/10000039/7ed57fb89712/animals-13-00884-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15de/10000039/8fc030ad8cb2/animals-13-00884-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15de/10000039/b34b74078bf1/animals-13-00884-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15de/10000039/7ed57fb89712/animals-13-00884-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15de/10000039/8fc030ad8cb2/animals-13-00884-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15de/10000039/b34b74078bf1/animals-13-00884-g003.jpg

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The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets.2021 年的 STRING 数据库:可定制的蛋白质-蛋白质网络,以及用户上传的基因/测量集的功能特征分析。
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ShinyGO: a graphical gene-set enrichment tool for animals and plants.
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