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通过生物信息学分析挖掘严重烧伤患者 COVID-19 感染的潜在治疗靶点。

Mining the potential therapeutic targets for COVID-19 infection in patients with severe burn injuries via bioinformatics analysis.

机构信息

Department of Burn and Plastic Surgery, Dongguan Tungwah Hospital, Dongguan, China.

Department of Plastic and Reconstructive Surgery, Shanghai Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China.

出版信息

Int Wound J. 2023 Sep;20(7):2742-2752. doi: 10.1111/iwj.14151. Epub 2023 Mar 16.

Abstract

The Coronavirus Disease-19 (COVID-19) pandemic is posing a serious challenge to human health. Burn victims are susceptible to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection leading to delayed recovery and even profound debilitation. Nevertheless, the molecular mechanisms underlying COVID-19 and severe burn are yet to be elucidated. In our work, the differentially expressed genes (DEGs) were identified from GSE157852 and GSE19743, and the common DEGs between COVID-19 and severe burn were extracted. Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), protein-protein interactions (PPI), gene coexpression network, and multifactor regulatory network analysis of hub genes were carried out. A total of 44 common DEGs were found between COVID-19 and severe burn. Functional analyses indicated that the pathways of immune regulation and cytokine response participated collectively in the development of severe burn and progression of COVID-19. Ten significant hub genes were identified, including MERTK, SIRPA, TLR3, ITGB1, DPP4, PTPRC, LY75, IFIT1, IL4R, and CD2. In addition, the gene coexpression network and regulatory network were constructed containing 42 microRNAs (miRNAs) and 2 transcription factors (TFs). Our study showed the shared pathogenic link between COVID-19 and severe burn. The identified common genes and pivotal pathways pave a new road for future mechanistic researches in severe burn injuries complicated with COVID-19.

摘要

新型冠状病毒病(COVID-19)大流行对人类健康构成严重挑战。烧伤患者易感染严重急性呼吸综合征冠状病毒 2(SARS-CoV-2),导致康复延迟甚至严重衰弱。然而,COVID-19 和严重烧伤的分子机制尚不清楚。在我们的工作中,从 GSE157852 和 GSE19743 中鉴定出差异表达基因(DEGs),并提取 COVID-19 和严重烧伤之间的共同 DEGs。进行了基因本体论(GO)、京都基因与基因组百科全书(KEGG)、蛋白质-蛋白质相互作用(PPI)、基因共表达网络和枢纽基因的多因素调控网络分析。在 COVID-19 和严重烧伤之间发现了 44 个共同的 DEG。功能分析表明,免疫调节和细胞因子反应途径共同参与了严重烧伤的发展和 COVID-19 的进展。鉴定出 10 个重要的枢纽基因,包括 MERTK、SIRPA、TLR3、ITGB1、DPP4、PTPRC、LY75、IFIT1、IL4R 和 CD2。此外,构建了包含 42 个 microRNAs(miRNAs)和 2 个转录因子(TFs)的基因共表达网络和调控网络。我们的研究表明 COVID-19 和严重烧伤之间存在共同的致病联系。确定的共同基因和关键途径为 COVID-19 合并严重烧伤的未来机制研究开辟了新的道路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aeb0/10410338/d3aeffe177b0/IWJ-20-2742-g007.jpg

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