Department of Physics, Kansas State University, Manhattan, Kansas 66506, United States.
Department of Biophysics, UT Southwestern Medical Center, Dallas, Texas 75390, United States.
J Phys Chem B. 2021 Jan 14;125(1):467-476. doi: 10.1021/acs.jpcb.0c11057. Epub 2021 Jan 4.
Biomolecular condensates appear throughout the cell serving a wide variety of functions. Many condensates appear to form by the assembly of multivalent molecules, which produce phase-separated networks with liquidlike properties. These networks then recruit client molecules, with the total composition providing functionality. Here we use a model system of poly-SUMO and poly-SIM proteins to understand client-network interactions and find that the structure of the network plays a strong role in defining client recruitment and thus functionality. The basic unit of assembly in this system is a zipperlike filament composed of alternating poly-SUMO and poly-SIM molecules. These filaments have defects of unsatisfied bonds that allow for both the formation of a 3D network and the recruitment of clients. The filamentous structure constrains the scaffold stoichiometries and the distribution of client recruitment sites that the network can accommodate. This results in a nonmonotonic client binding response that can be tuned independently by the client valence and binding energy. These results show how the interactions within liquid states can be disordered yet still contain structural features that provide functionality to the condensate.
生物分子凝聚体遍布细胞,发挥着各种各样的功能。许多凝聚体似乎是通过多价分子的组装形成的,这些分子形成具有液态特性的相分离网络。然后,这些网络招募客户分子,其总组成提供功能。在这里,我们使用聚 SUMO 和聚 SIM 蛋白的模型系统来了解客户网络的相互作用,并发现网络的结构在定义客户招募以及因此的功能方面起着重要作用。该系统中组装的基本单元是由交替的聚 SUMO 和聚 SIM 分子组成的拉链状细丝。这些纤维存在未满足的键缺陷,允许形成 3D 网络并招募客户。丝状结构限制了支架的化学计量比和网络可以容纳的客户招募位点的分布。这导致客户结合响应呈非单调变化,可通过客户价态和结合能独立调节。这些结果表明,液体状态中的相互作用如何可以是无序的,但仍然包含为凝聚体提供功能的结构特征。