Rodríguez-Cerdeira Carmen, Molares-Vila Alberto, Sánchez-Cárdenas Carlos Daniel, Velásquez-Bámaca Jimmy Steven, Martínez-Herrera Erick
Efficiency, Quality, and Costs in Health Services Research Group (EFISALUD), Galicia Sur Health Research Institute (IISGS), Servizo Galego de Saúde-Universidade de Vigo (UVIGO), 36213 Vigo, Spain.
Dermatology Department, Hospital do Vithas, 36206 Vigo, Spain.
Antibiotics (Basel). 2023 Mar 13;12(3):566. doi: 10.3390/antibiotics12030566.
Antifungal peptides (AFPs) comprise a group of substances with a broad spectrum of activities and complex action mechanisms. They develop in nature via an evolutionary process resulting from the interactions between hosts and pathogens. The AFP database is experimentally verified and curated from research articles, patents, and public databases. In this review, we compile information about the primary databases and bioinformatics tools that have been used in the discovery of AFPs during the last 15 years. We focus on the classification and prediction of AFPs using different physicochemical properties, such as polarity, hydrophobicity, hydrophilicity, mass, acidic, basic, and isoelectric indices, and other structural properties. Another method for discovering AFPs is the implementation of a peptidomic approach and bioinformatics filtering, which gave rise to a new family of peptides that exhibit a broad spectrum of antimicrobial activity against with low hemolytic effects. The application of machine intelligence in the sphere of biological sciences has led to the development of automated tools. The progress made in this area has also paved the way for producing new drugs more quickly and effectively. However, we also identified that further advancements are still needed to complete the AFP libraries.
抗真菌肽(AFPs)是一类具有广泛活性和复杂作用机制的物质。它们在自然界中通过宿主与病原体之间相互作用的进化过程产生。AFP数据库经过实验验证,并从研究文章、专利和公共数据库中整理而来。在本综述中,我们汇编了过去15年中用于发现AFPs的主要数据库和生物信息学工具的相关信息。我们重点关注利用不同物理化学性质(如极性、疏水性、亲水性、质量、酸性、碱性和等电指数)以及其他结构性质对AFPs进行分类和预测。发现AFPs的另一种方法是实施肽组学方法和生物信息学筛选,这产生了一类新的肽,它们对多种病原体具有广泛的抗菌活性且溶血作用低。机器学习在生物科学领域的应用推动了自动化工具的发展。该领域取得的进展也为更快、更有效地生产新药铺平了道路。然而,我们也发现,要完善AFP文库仍需要进一步的进展。