• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

应用于抗真菌肽发现的生物信息学方法

Bioinformatics Approaches Applied to the Discovery of Antifungal Peptides.

作者信息

Rodríguez-Cerdeira Carmen, Molares-Vila Alberto, Sánchez-Cárdenas Carlos Daniel, Velásquez-Bámaca Jimmy Steven, Martínez-Herrera Erick

机构信息

Efficiency, Quality, and Costs in Health Services Research Group (EFISALUD), Galicia Sur Health Research Institute (IISGS), Servizo Galego de Saúde-Universidade de Vigo (UVIGO), 36213 Vigo, Spain.

Dermatology Department, Hospital do Vithas, 36206 Vigo, Spain.

出版信息

Antibiotics (Basel). 2023 Mar 13;12(3):566. doi: 10.3390/antibiotics12030566.

DOI:10.3390/antibiotics12030566
PMID:36978434
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10044696/
Abstract

Antifungal peptides (AFPs) comprise a group of substances with a broad spectrum of activities and complex action mechanisms. They develop in nature via an evolutionary process resulting from the interactions between hosts and pathogens. The AFP database is experimentally verified and curated from research articles, patents, and public databases. In this review, we compile information about the primary databases and bioinformatics tools that have been used in the discovery of AFPs during the last 15 years. We focus on the classification and prediction of AFPs using different physicochemical properties, such as polarity, hydrophobicity, hydrophilicity, mass, acidic, basic, and isoelectric indices, and other structural properties. Another method for discovering AFPs is the implementation of a peptidomic approach and bioinformatics filtering, which gave rise to a new family of peptides that exhibit a broad spectrum of antimicrobial activity against with low hemolytic effects. The application of machine intelligence in the sphere of biological sciences has led to the development of automated tools. The progress made in this area has also paved the way for producing new drugs more quickly and effectively. However, we also identified that further advancements are still needed to complete the AFP libraries.

摘要

抗真菌肽(AFPs)是一类具有广泛活性和复杂作用机制的物质。它们在自然界中通过宿主与病原体之间相互作用的进化过程产生。AFP数据库经过实验验证,并从研究文章、专利和公共数据库中整理而来。在本综述中,我们汇编了过去15年中用于发现AFPs的主要数据库和生物信息学工具的相关信息。我们重点关注利用不同物理化学性质(如极性、疏水性、亲水性、质量、酸性、碱性和等电指数)以及其他结构性质对AFPs进行分类和预测。发现AFPs的另一种方法是实施肽组学方法和生物信息学筛选,这产生了一类新的肽,它们对多种病原体具有广泛的抗菌活性且溶血作用低。机器学习在生物科学领域的应用推动了自动化工具的发展。该领域取得的进展也为更快、更有效地生产新药铺平了道路。然而,我们也发现,要完善AFP文库仍需要进一步的进展。

相似文献

1
Bioinformatics Approaches Applied to the Discovery of Antifungal Peptides.应用于抗真菌肽发现的生物信息学方法
Antibiotics (Basel). 2023 Mar 13;12(3):566. doi: 10.3390/antibiotics12030566.
2
Candida albicans and Antifungal Peptides.白色念珠菌与抗真菌肽
Infect Dis Ther. 2023 Dec;12(12):2631-2648. doi: 10.1007/s40121-023-00889-9. Epub 2023 Nov 8.
3
AFP-MFL: accurate identification of antifungal peptides using multi-view feature learning.AFP-MFL:使用多视图特征学习准确识别抗真菌肽
Brief Bioinform. 2023 Jan 19;24(1). doi: 10.1093/bib/bbac606.
4
Accelerating the discovery of antifungal peptides using deep temporal convolutional networks.使用深度时间卷积网络加速抗真菌肽的发现。
Brief Bioinform. 2022 Mar 10;23(2). doi: 10.1093/bib/bbac008.
5
DeepAFP: An effective computational framework for identifying antifungal peptides based on deep learning.DeepAFP:一种基于深度学习的有效计算框架,用于识别抗真菌肽。
Protein Sci. 2023 Oct;32(10):e4758. doi: 10.1002/pro.4758.
6
An Evaluation on Different Machine Learning Algorithms for Classification and Prediction of Antifungal Peptides.用于抗真菌肽分类和预测的不同机器学习算法评估
Med Chem. 2016;12(8):795-800. doi: 10.2174/1573406412666160229150823.
7
Deep-AFPpred: identifying novel antifungal peptides using pretrained embeddings from seq2vec with 1DCNN-BiLSTM.Deep-AFPpred:使用 seq2vec 预训练的嵌入和 1DCNN-BiLSTM 识别新型抗真菌肽。
Brief Bioinform. 2022 Jan 17;23(1). doi: 10.1093/bib/bbab422.
8
In silico-driven identification and experimental confirmation of antifungal proteins (AFPs) against Candidaalbicans.通过计算机驱动鉴定抗白色念珠菌的抗真菌蛋白(AFPs)并进行实验验证。
Biochimie. 2025 Jan;228:44-57. doi: 10.1016/j.biochi.2024.08.007. Epub 2024 Aug 10.
9
AFP-CMBPred: Computational identification of antifreeze proteins by extending consensus sequences into multi-blocks evolutionary information.AFP-CMBPred:通过将共识序列扩展到多块进化信息来计算识别抗冻蛋白。
Comput Biol Med. 2021 Dec;139:105006. doi: 10.1016/j.compbiomed.2021.105006. Epub 2021 Nov 2.
10
PlantAFP: a curated database of plant-origin antifungal peptides.植物 AFP:一个经过精心整理的植物源抗真菌肽数据库。
Amino Acids. 2019 Nov;51(10-12):1561-1568. doi: 10.1007/s00726-019-02792-5. Epub 2019 Oct 14.

引用本文的文献

1
Bioinformatics-Driven mRNA-Based Vaccine Design for Controlling Tinea Cruris Induced by .基于生物信息学的信使核糖核酸疫苗设计用于控制由……引起的股癣
Pharmaceutics. 2024 Jul 25;16(8):983. doi: 10.3390/pharmaceutics16080983.
2
Exploring the frontiers of therapeutic breadth of antifungal peptides: A new avenue in antifungal drugs.探索抗真菌肽治疗广度的前沿:抗真菌药物的新途径。
J Ind Microbiol Biotechnol. 2024 Jan 9;51. doi: 10.1093/jimb/kuae018.

本文引用的文献

1
Accelerating the discovery of antifungal peptides using deep temporal convolutional networks.使用深度时间卷积网络加速抗真菌肽的发现。
Brief Bioinform. 2022 Mar 10;23(2). doi: 10.1093/bib/bbac008.
2
DRAMP 3.0: an enhanced comprehensive data repository of antimicrobial peptides.DRAMP 3.0:一个增强型抗菌肽综合数据库。
Nucleic Acids Res. 2022 Jan 7;50(D1):D488-D496. doi: 10.1093/nar/gkab651.
3
PhytoAFP: In Silico Approaches for Designing Plant-Derived Antifungal Peptides.植物抗真菌肽:用于设计植物源抗真菌肽的计算机模拟方法
Antibiotics (Basel). 2021 Jul 5;10(7):815. doi: 10.3390/antibiotics10070815.
4
How urgent is the need for new antifungals?新抗真菌药物的需求有多迫切?
Expert Opin Pharmacother. 2021 Oct;22(14):1857-1870. doi: 10.1080/14656566.2021.1935868. Epub 2021 Jul 7.
5
Activity and Mechanism of Action of Antifungal Peptides from Microorganisms: A Review.微生物来源的抗真菌肽的活性和作用机制:综述。
Molecules. 2021 Jun 5;26(11):3438. doi: 10.3390/molecules26113438.
6
Computational approach, scanning electron and fluorescence microscopies revealed insights into the action mechanisms of anticandidal peptide Mo-CBP-PepIII.计算方法、扫描电子显微镜和荧光显微镜揭示了抗真菌肽 Mo-CBP-PepIII 的作用机制。
Life Sci. 2021 Sep 15;281:119775. doi: 10.1016/j.lfs.2021.119775. Epub 2021 Jun 26.
7
The PRISMA 2020 statement: an updated guideline for reporting systematic reviews.PRISMA 2020 声明:系统评价报告的更新指南。
BMJ. 2021 Mar 29;372:n71. doi: 10.1136/bmj.n71.
8
Antifungal Peptides as Therapeutic Agents.抗真菌肽作为治疗剂。
Front Cell Infect Microbiol. 2020 Mar 17;10:105. doi: 10.3389/fcimb.2020.00105. eCollection 2020.
9
PlantAFP: a curated database of plant-origin antifungal peptides.植物 AFP:一个经过精心整理的植物源抗真菌肽数据库。
Amino Acids. 2019 Nov;51(10-12):1561-1568. doi: 10.1007/s00726-019-02792-5. Epub 2019 Oct 14.
10
The antimicrobial peptides and their potential clinical applications.抗菌肽及其潜在的临床应用。
Am J Transl Res. 2019 Jul 15;11(7):3919-3931. eCollection 2019.