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开发一种结合 EZ-Fast DNA 提取和 LAMP 检测的高灵敏度即时检测非洲猪瘟的方法:使用来自越南的自然感染猪全血样本进行评估。

Development of a highly sensitive point-of-care test for African swine fever that combines EZ-Fast DNA extraction with LAMP detection: Evaluation using naturally infected swine whole blood samples from Vietnam.

机构信息

Faculty of Veterinary Medicine, Vietnam National University of Agriculture, Hanoi, Vietnam.

Graduate School of Medicine and Veterinary Medicine, University of Miyazaki, Miyazaki, Japan.

出版信息

Vet Med Sci. 2023 May;9(3):1226-1233. doi: 10.1002/vms3.1124. Epub 2023 Apr 3.

Abstract

BACKGROUND

While early detection and early containment are key to controlling the African swine fever (ASF) pandemic, the lack of practical testing methods for use in the field are a major barrier to achieving this feat.

OBJECTIVES

To describe the development of a rapid and sensitive point-of-care test (POCT) for ASF, and its evaluation using swine whole blood samples for field settings.

METHODS

In total, 89 swine whole blood samples were collected from Vietnamese swine farms and were performed the POCT using a combination of crude DNA extraction and LAMP (loop-mediated isothermal amplification) amplification.

RESULTS

The POCT enabled crude DNA to be extracted from swine whole blood samples within 10 min at extremely low cost and with relative ease. The entire POCT required a maximum of 50 min from the beginning of DNA extraction to final judgment. Compared to a conventional real-time PCR detection, the POCT showed a 1 log reduction in detection sensitivity, but comparable diagnostic sensitivity of 100% (56/56) and diagnostic specificity of 100% (33/33). The POCT was quicker and easier to perform and did not require special equipment.

CONCLUSIONS

This POCT is expected to facilitate early diagnosis and containment of ASF invasion into both regions in which it is endemic and eradicated.

摘要

背景

虽然早期检测和早期遏制是控制非洲猪瘟(ASF)大流行的关键,但缺乏实用的现场检测方法是实现这一目标的主要障碍。

目的

描述一种用于 ASF 的快速、敏感的即时检测(POCT)方法的开发,并使用猪全血样本在现场环境中对其进行评估。

方法

共采集了来自越南养猪场的 89 份猪全血样本,采用粗提取 DNA 和 LAMP(环介导等温扩增)扩增相结合的方法进行 POCT。

结果

POCT 能够在极低的成本和相对容易的条件下,在 10 分钟内从猪全血样本中提取粗提取 DNA。从 DNA 提取开始到最终判断,整个 POCT 最多需要 50 分钟。与常规实时 PCR 检测相比,POCT 的检测灵敏度降低了 1 个对数级,但诊断灵敏度为 100%(56/56),诊断特异性为 100%(33/33)。POCT 更快、更容易操作,并且不需要特殊设备。

结论

这种 POCT 有望促进 ASF 在流行地区和已根除地区的早期诊断和遏制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ace2/10188095/91824cb743b4/VMS3-9-1226-g003.jpg

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