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(杜鹃花目:山茶科)的完整叶绿体基因组序列。

The complete chloroplast genome sequence of (Ericales: Theaceae).

作者信息

Wang Yanli, Huang Jin, Xie Na, Zhang Dandan, Tong Wei, Xia Enhua

机构信息

State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, China.

出版信息

Mitochondrial DNA B Resour. 2023 Apr 27;8(4):536-540. doi: 10.1080/23802359.2023.2204972. eCollection 2023.

Abstract

H.T. Chang, H.S. Wang & B.H. Chen 1983 is a native species in China, which has significant economic and breeding values. Here, we assembled and analyzed the complete chloroplast genome sequence of based on the whole genome sequencing data from Illumina NovaSeq6000 platform. Results show that the complete chloroplast genome of is 157,099 bp in length, and comprises a large single-copy (LSC, 86,643 bp) region, a small single-copy (SSC, 18,276 bp) region, and a pair of inverted repeats (IRs, 26,090 bp) region. Annotation of the chloroplast genome predicts a total of 133 genes, including 88 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content accounts for 37.30% of the genome, which is clearly consistent with that of other previously published species from section . Phylogenetic analyses of the whole chloroplast genome sequences of 14 species using as outgroup reveals that has a close relationship with .

摘要

H.T. Chang、H.S. Wang和B.H. Chen 1983是中国本土物种,具有重要的经济和育种价值。在此,我们基于Illumina NovaSeq6000平台的全基因组测序数据,组装并分析了其完整的叶绿体基因组序列。结果表明,该物种的完整叶绿体基因组长度为157,099 bp,包括一个大单拷贝(LSC,86,643 bp)区域、一个小单拷贝(SSC,18,276 bp)区域和一对反向重复(IRs,26,090 bp)区域。该叶绿体基因组注释共预测出133个基因,包括88个蛋白质编码基因、8个核糖体RNA基因和37个转移RNA基因。基因组的总体GC含量占基因组的37.30%,这与之前发表的来自该组的其他物种明显一致。以作为外类群,对14个物种的完整叶绿体基因组序列进行系统发育分析表明,该物种与具有密切关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6d3e/10142311/73ad90a07dd3/TMDN_A_2204972_F0001_C.jpg

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