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Rubisco 功能、演化与工程改造。

Rubisco Function, Evolution, and Engineering.

机构信息

Innovative Genomics Institute, University of California, Berkeley, California, USA; email:

Department of Molecular and Cell Biology, University of California, Berkeley, California, USA.

出版信息

Annu Rev Biochem. 2023 Jun 20;92:385-410. doi: 10.1146/annurev-biochem-040320-101244. Epub 2023 Apr 26.

Abstract

Carbon fixation is the process by which CO is converted from a gas into biomass. The Calvin-Benson-Bassham cycle (CBB) is the dominant carbon-consuming pathway on Earth, driving >99.5% of the ∼120 billion tons of carbon that are converted to sugar by plants, algae, and cyanobacteria. The carboxylase enzyme in the CBB, ribulose-1,5-bisphosphate carboxylase/oxygenase (rubisco), fixes one CO molecule per turn of the cycle into bioavailable sugars. Despite being critical to the assimilation of carbon, rubisco's kinetic rate is not very fast, limiting flux through the pathway. This bottleneck presents a paradox: Why has rubisco not evolved to be a better catalyst? Many hypothesize that the catalytic mechanism of rubisco is subject to one or more trade-offs and that rubisco variants have been optimized for their native physiological environment. Here, we review the evolution and biochemistry of rubisco through the lens of structure and mechanism in order to understand what trade-offs limit its improvement. We also review the many attempts to improve rubisco itself and thereby promote plant growth.

摘要

碳固定是将 CO 从气体转化为生物质的过程。卡尔文-本森-巴斯汉姆循环(CBB)是地球上主要的碳消耗途径,驱动着植物、藻类和蓝细菌将约 1200 亿吨碳转化为糖的过程,占比超过 99.5%。CBB 中的羧化酶,核酮糖-1,5-二磷酸羧化酶/加氧酶(Rubisco),每循环一次就将一个 CO 分子固定到生物可用的糖中。尽管 Rubisco 对碳的同化至关重要,但它的动力学速率并不是很快,限制了途径的通量。这一瓶颈带来了一个悖论:为什么 Rubisco 没有进化成更好的催化剂?许多人假设 Rubisco 的催化机制受到一个或多个权衡的影响,并且 Rubisco 变体已经针对其天然生理环境进行了优化。在这里,我们通过结构和机制的视角来回顾 Rubisco 的进化和生物化学,以了解哪些权衡限制了它的改进。我们还回顾了许多改进 Rubisco 本身的尝试,从而促进植物生长。

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