Mumcu Hande, Zaugg Julian, Keles Irem, Kayrav Aycan, Balci Nurgul, Nelson David R, Hugenholtz Philip, Gillam Elizabeth M J, Gul Karaguler Nevin
Department of Molecular Biology and Genetics, Faculty of Science and Letters, Istanbul Technical University, Istanbul, Türkiye.
Dr. Orhan Öcalgiray Molecular Biology-Biotechnology and Genetics Research Center, Istanbul Technical University, Istanbul, Türkiye.
PLoS One. 2025 Sep 8;20(9):e0330523. doi: 10.1371/journal.pone.0330523. eCollection 2025.
Cytochrome P450 enzymes (P450s), particularly those of microbial origin, are highly versatile biocatalysts capable of catalyzing a broad range of regio- and stere-oselective reactions. P450s derived from extremophiles are of particular interest due to their potential tolerance to high temperature, salinity, and acidity. This study aimed to identify and classify novel microbial P450 enzymes from extreme environments across Türkiye, including hydrothermal springs, hypersaline lakes, and an acid-mine drainage site. The focus of this study was on classifying the sequence diversity of P450 enzymes in these sites. To that end, shotgun metagenomic analysis of six sites, using de novo binning, phylogenetic analysis, and functional gene annotation, was used to discover 311 putative P450 sequences, assigned to 87 families and 158 subfamilies, including 8 novel families and 49 new subfamilies. Of these, 237 were in 138 metagenomic bins, including 45 high-quality metagenome-assembled genomes. The distribution of P450 families varied across sites, reflecting distinct environmental conditions and microbial community compositions. These findings highlight the untapped potential of Türkiye's extreme habitats as a source of novel biocatalysts. Beyond their industrial relevance, extremophile-derived P450s may also play key roles in enabling microbial adaptation to harsh environmental conditions, through their involvement in stress-responsive metabolic pathways and structurally resilient enzyme forms. This work provides a foundation for future studies into both their biotechnological applications and ecological functions.
细胞色素P450酶(P450s),尤其是那些微生物来源的酶,是高度通用的生物催化剂,能够催化广泛的区域选择性和立体选择性反应。源自极端微生物的P450s因其对高温、高盐度和酸度的潜在耐受性而备受关注。本研究旨在从土耳其各地的极端环境中鉴定和分类新型微生物P450酶,这些环境包括温泉、高盐湖和酸性矿山排水区。本研究的重点是对这些地点的P450酶的序列多样性进行分类。为此,通过从头分箱、系统发育分析和功能基因注释,对六个地点进行鸟枪法宏基因组分析,以发现311个推定的P450序列,这些序列被归入87个家族和158个亚家族,包括8个新家族和49个新亚家族。其中,237个在138个宏基因组箱中,包括45个高质量的宏基因组组装基因组。P450家族的分布在不同地点有所不同,反映了不同的环境条件和微生物群落组成。这些发现突出了土耳其极端栖息地作为新型生物催化剂来源的未开发潜力。除了其工业相关性外,源自极端微生物的P450s还可能通过参与应激反应代谢途径和结构上有弹性的酶形式,在使微生物适应恶劣环境条件方面发挥关键作用。这项工作为未来对其生物技术应用和生态功能的研究奠定了基础。