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在 VMXi 进行室温原位结晶学的蛋白质到结构的流水线

Protein-to-structure pipeline for ambient-temperature in situ crystallography at VMXi.

机构信息

Diamond Light Source Ltd, Harwell Science and Innovation Campus, Didcot OX11 0DE, United Kingdom.

Interdisciplinary Biomedical Research Centre, School of Science and Technology, Nottingham Trent University, Clifton Campus, Nottingham NG11 8NS, United Kingdom.

出版信息

IUCrJ. 2023 Jul 1;10(Pt 4):420-429. doi: 10.1107/S2052252523003810.

DOI:10.1107/S2052252523003810
PMID:37199504
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10324489/
Abstract

The utility of X-ray crystal structures determined under ambient-temperature conditions is becoming increasingly recognized. Such experiments can allow protein dynamics to be characterized and are particularly well suited to challenging protein targets that may form fragile crystals that are difficult to cryo-cool. Room-temperature data collection also enables time-resolved experiments. In contrast to the high-throughput highly automated pipelines for determination of structures at cryogenic temperatures widely available at synchrotron beamlines, room-temperature methodology is less mature. Here, the current status of the fully automated ambient-temperature beamline VMXi at Diamond Light Source is described, and a highly efficient pipeline from protein sample to final multi-crystal data analysis and structure determination is shown. The capability of the pipeline is illustrated using a range of user case studies representing different challenges, and from high and lower symmetry space groups and varied crystal sizes. It is also demonstrated that very rapid structure determination from crystals in situ within crystallization plates is now routine with minimal user intervention.

摘要

越来越多的人认识到在环境温度条件下确定 X 射线晶体结构的实用性。此类实验可以对蛋白质动力学进行表征,特别适用于可能形成易碎晶体且难以进行低温冷却的具有挑战性的蛋白质靶标。室温数据采集还可以实现时间分辨实验。与低温条件下在同步加速器光束线上广泛使用的高通量、高度自动化的结构测定流水线相比,室温方法的成熟度较低。本文介绍了 Diamond Light Source 上全自动环境温度光束线 VMXi 的现状,并展示了从蛋白质样品到最终多晶体数据分析和结构测定的高效流水线。通过一系列代表不同挑战的用户案例研究,以及来自高和低对称性空间群和不同晶体尺寸的案例研究,展示了该流水线的功能。还证明了现在可以通过最小的用户干预,在结晶板内原位结晶的晶体中快速进行结构测定。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/562b/10324489/68db96df4308/m-10-00420-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/562b/10324489/0eb75e96c5e1/m-10-00420-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/562b/10324489/5d5914f4074c/m-10-00420-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/562b/10324489/68db96df4308/m-10-00420-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/562b/10324489/0eb75e96c5e1/m-10-00420-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/562b/10324489/5d5914f4074c/m-10-00420-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/562b/10324489/68db96df4308/m-10-00420-fig3.jpg

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