• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

利用 X 射线晶体学在室温附近确定生物分子结构:概念、方法和未来优化。

Determining biomolecular structures near room temperature using X-ray crystallography: concepts, methods and future optimization.

机构信息

Physics Department, Cornell University, Ithaca, NY 14853, USA.

出版信息

Acta Crystallogr D Struct Biol. 2023 Jan 1;79(Pt 1):78-94. doi: 10.1107/S2059798322011652.

DOI:10.1107/S2059798322011652
PMID:36601809
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9815097/
Abstract

For roughly two decades, cryocrystallography has been the overwhelmingly dominant method for determining high-resolution biomolecular structures. Competition from single-particle cryo-electron microscopy and micro-electron diffraction, increased interest in functionally relevant information that may be missing or corrupted in structures determined at cryogenic temperature, and interest in time-resolved studies of the biomolecular response to chemical and optical stimuli have driven renewed interest in data collection at room temperature and, more generally, at temperatures from the protein-solvent glass transition near 200 K to ∼350 K. Fischer has recently reviewed practical methods for room-temperature data collection and analysis [Fischer (2021), Q. Rev. Biophys. 54, e1]. Here, the key advantages and physical principles of, and methods for, crystallographic data collection at noncryogenic temperatures and some factors relevant to interpreting the resulting data are discussed. For room-temperature data collection to realize its potential within the structural biology toolkit, streamlined and standardized methods for delivering crystals prepared in the home laboratory to the synchrotron and for automated handling and data collection, similar to those for cryocrystallography, should be implemented.

摘要

大约二十年来,低温晶体学一直是确定高分辨率生物分子结构的压倒性主导方法。来自单颗粒低温电子显微镜和微电子衍射的竞争、对低温下确定的结构中可能缺失或损坏的功能相关信息的兴趣增加,以及对生物分子对化学和光学刺激的响应的时间分辨研究的兴趣,都推动了在室温下,更广泛地说,在从接近 200 K 的蛋白质-溶剂玻璃化转变温度到约 350 K 的温度下进行数据收集的重新关注。Fischer 最近回顾了室温数据收集和分析的实用方法[Fischer(2021),Q. Rev. Biophys. 54,e1]。在这里,讨论了在非低温下进行晶体学数据收集的关键优势、物理原理和方法,以及与解释所得数据相关的一些因素。为了使室温数据收集在结构生物学工具包中实现其潜力,应该实施类似于低温晶体学的方法,将在家用实验室制备的晶体递送到同步加速器,并进行自动化处理和数据收集。

相似文献

1
Determining biomolecular structures near room temperature using X-ray crystallography: concepts, methods and future optimization.利用 X 射线晶体学在室温附近确定生物分子结构:概念、方法和未来优化。
Acta Crystallogr D Struct Biol. 2023 Jan 1;79(Pt 1):78-94. doi: 10.1107/S2059798322011652.
2
Room-temperature serial crystallography at synchrotron X-ray sources using slowly flowing free-standing high-viscosity microstreams.利用缓慢流动的独立高粘度微流在同步加速器X射线源处进行室温串行晶体学研究。
Acta Crystallogr D Biol Crystallogr. 2015 Feb;71(Pt 2):387-97. doi: 10.1107/S1399004714026327. Epub 2015 Jan 23.
3
Radiation damage and dose limits in serial synchrotron crystallography at cryo- and room temperatures.在 cryo 和室温下的串行同步辐射晶体学中的辐射损伤和剂量限制。
Proc Natl Acad Sci U S A. 2020 Feb 25;117(8):4142-4151. doi: 10.1073/pnas.1821522117. Epub 2020 Feb 11.
4
Protein-to-structure pipeline for ambient-temperature in situ crystallography at VMXi.在 VMXi 进行室温原位结晶学的蛋白质到结构的流水线
IUCrJ. 2023 Jul 1;10(Pt 4):420-429. doi: 10.1107/S2052252523003810.
5
Evaluating the impact of X-ray damage on conformational heterogeneity in room-temperature (277 K) and cryo-cooled protein crystals.评估室温(277 K)和低温冷冻条件下 X 射线损伤对蛋白质晶体构象异质性的影响。
Acta Crystallogr D Struct Biol. 2022 Aug 1;78(Pt 8):945-963. doi: 10.1107/S2059798322005939. Epub 2022 Jul 14.
6
Crystal-on-crystal chips for in situ serial diffraction at room temperature.室温下原位连续衍射的晶-晶芯片。
Lab Chip. 2018 Jul 24;18(15):2246-2256. doi: 10.1039/c8lc00489g.
7
Room-temperature serial synchrotron crystallography of Drosophila cryptochrome.果蝇隐花色素的室温连续同步辐射晶体学。
Acta Crystallogr D Struct Biol. 2022 Aug 1;78(Pt 8):975-985. doi: 10.1107/S2059798322007008. Epub 2022 Jul 27.
8
Integrated sample-handling and mounting system for fixed-target serial synchrotron crystallography.用于固定靶连续同步辐射晶体学的集成样品处理和安装系统。
Acta Crystallogr D Struct Biol. 2021 May 1;77(Pt 5):628-644. doi: 10.1107/S2059798321001868. Epub 2021 Apr 19.
9
Conformational variation of proteins at room temperature is not dominated by radiation damage.蛋白质在室温下的构象变化并非由辐射损伤主导。
J Synchrotron Radiat. 2017 Jan 1;24(Pt 1):73-82. doi: 10.1107/S1600577516017343.
10
Pros and cons of cryocrystallography: should we also collect a room-temperature data set?低温晶体学的利弊:我们是否也应该收集室温数据集?
Acta Crystallogr D Biol Crystallogr. 2005 Jan;61(Pt 1):80-7. doi: 10.1107/S0907444904027179. Epub 2004 Dec 17.

引用本文的文献

1
Enhanced intensity-based clustering of isomorphous multi-crystal data sets in the presence of subtle variations.在存在细微变化的情况下,对同构多晶体数据集进行基于强度增强的聚类。
Acta Crystallogr D Struct Biol. 2025 Jun 1;81(Pt 6):278-290. doi: 10.1107/S2059798325004589. Epub 2025 May 29.
2
Instrumentation and methods for efficient time-resolved X-ray crystallography of biomolecular systems with sub-10 ms time resolution.用于生物分子系统高效时间分辨X射线晶体学的仪器和方法,时间分辨率低于10毫秒。
IUCrJ. 2025 May 1;12(Pt 3):372-383. doi: 10.1107/S205225252500288X.
3
Structure-Based Experimental Datasets for Benchmarking Protein Simulation Force Fields [Article v0.1].用于蛋白质模拟力场基准测试的基于结构的实验数据集 [文章 v0.1]
ArXiv. 2025 Mar 25:arXiv:2303.11056v2.
4
The current status and future prospects of the Synchrotron Radiation Protein Crystallography Core Facility at NSRRC: a focus on the TPS 05A, TPS 07A and TLS 15A1 beamlines.台湾新竹国家同步辐射研究中心同步辐射蛋白质晶体学核心设施的现状与未来展望:聚焦于TPS 05A、TPS 07A和TLS 15A1光束线
J Synchrotron Radiat. 2025 Mar 1;32(Pt 2):457-465. doi: 10.1107/S1600577525000177. Epub 2025 Feb 6.
5
Advancing macromolecular structure determination with microsecond X-ray pulses at a 4th generation synchrotron.利用第四代同步加速器的微秒级X射线脉冲推进大分子结构测定。
Commun Chem. 2025 Jan 7;8(1):6. doi: 10.1038/s42004-024-01404-y.
6
Scalable fabrication of an array-type fixed-target device for automated room temperature X-ray protein crystallography.用于自动化室温X射线蛋白质晶体学的阵列式固定靶装置的可扩展制造。
Sci Rep. 2025 Jan 2;15(1):334. doi: 10.1038/s41598-024-83341-3.
7
Sheet-on-sheet fixed target data collection devices for serial crystallography at synchrotron and XFEL sources.用于同步加速器和X射线自由电子激光源的串行晶体学的片上片固定目标数据收集装置。
J Appl Crystallogr. 2024 Oct 16;57(Pt 6):1725-1732. doi: 10.1107/S1600576724008914. eCollection 2024 Dec 1.
8
Exploring the dynamics of allostery through multi-dimensional crystallography.通过多维晶体学探索变构动力学。
Biophys Rev. 2024 Sep 19;16(5):563-570. doi: 10.1007/s12551-024-01224-3. eCollection 2024 Oct.
9
CHiMP: deep-learning tools trained on protein crystallization micrographs to enable automation of experiments.CHiMP:基于蛋白质结晶显微图像训练的深度学习工具,可实现实验自动化。
Acta Crystallogr D Struct Biol. 2024 Oct 1;80(Pt 10):744-764. doi: 10.1107/S2059798324009276.
10
Utilizing Molecular Dynamics Simulations, Machine Learning, Cryo-EM, and NMR Spectroscopy to Predict and Validate Protein Dynamics.利用分子动力学模拟、机器学习、冷冻电镜和 NMR 光谱学来预测和验证蛋白质动力学。
Int J Mol Sci. 2024 Sep 8;25(17):9725. doi: 10.3390/ijms25179725.

本文引用的文献

1
Serial femtosecond crystallography.串行飞秒晶体学
Nat Rev Methods Primers. 2022 Aug 4;2. doi: 10.1038/s43586-022-00141-7.
2
Protein structure predictions to atomic accuracy with AlphaFold.使用AlphaFold进行原子精度的蛋白质结构预测。
Nat Methods. 2022 Jan;19(1):11-12. doi: 10.1038/s41592-021-01362-6.
3
Observation of substrate diffusion and ligand binding in enzyme crystals using high-repetition-rate mix-and-inject serial crystallography.使用高重复率混合注射串联晶体学观察酶晶体中的底物扩散和配体结合。
IUCrJ. 2021 Sep 9;8(Pt 6):878-895. doi: 10.1107/S2052252521008125. eCollection 2021 Nov 1.
4
High-resolution single-particle cryo-EM of samples vitrified in boiling nitro-gen.在沸腾氮气中玻璃化的样品的高分辨率单颗粒冷冻电镜技术
IUCrJ. 2021 Sep 7;8(Pt 6):867-877. doi: 10.1107/S2052252521008095. eCollection 2021 Nov 1.
5
Millisecond mix-and-quench crystallography (MMQX) enables time-resolved studies of PEPCK with remote data collection.毫秒混合淬灭晶体学(MMQX)可通过远程数据收集对磷酸烯醇式丙酮酸羧激酶进行时间分辨研究。
IUCrJ. 2021 Aug 4;8(Pt 5):784-792. doi: 10.1107/S2052252521007053. eCollection 2021 Sep 1.
6
Advances and challenges in time-resolved macromolecular crystallography.时间分辨大分子晶体学的进展与挑战
Science. 2021 Aug 27;373(6558). doi: 10.1126/science.aba0954.
7
Mycobacterium tuberculosis ferritin: a suitable workhorse protein for cryo-EM development.结核分枝杆菌铁蛋白:适合用于冷冻电镜开发的工作载体蛋白。
Acta Crystallogr D Struct Biol. 2021 Aug 1;77(Pt 8):1077-1083. doi: 10.1107/S2059798321007233. Epub 2021 Jul 29.
8
An on-demand, drop-on-drop method for studying enzyme catalysis by serial crystallography.按需、逐滴的方法通过连续结晶学研究酶催化。
Nat Commun. 2021 Jul 22;12(1):4461. doi: 10.1038/s41467-021-24757-7.
9
Integrated sample-handling and mounting system for fixed-target serial synchrotron crystallography.用于固定靶连续同步辐射晶体学的集成样品处理和安装系统。
Acta Crystallogr D Struct Biol. 2021 May 1;77(Pt 5):628-644. doi: 10.1107/S2059798321001868. Epub 2021 Apr 19.
10
Ice in biomolecular cryocrystallography.生物分子晶体学中的冰晶。
Acta Crystallogr D Struct Biol. 2021 Apr 1;77(Pt 4):540-554. doi: 10.1107/S2059798321001170. Epub 2021 Mar 30.