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基于伊辛动力学的 COVID-19 住院预测的循证时空模型。

Evidence-driven spatiotemporal COVID-19 hospitalization prediction with Ising dynamics.

机构信息

The University of Edinburgh, Edinburgh, Edinburgh, UK.

Health Data Research UK, London, UK.

出版信息

Nat Commun. 2023 May 29;14(1):3093. doi: 10.1038/s41467-023-38756-3.

DOI:10.1038/s41467-023-38756-3
PMID:37248229
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10226446/
Abstract

In this work, we aim to accurately predict the number of hospitalizations during the COVID-19 pandemic by developing a spatiotemporal prediction model. We propose HOIST, an Ising dynamics-based deep learning model for spatiotemporal COVID-19 hospitalization prediction. By drawing the analogy between locations and lattice sites in statistical mechanics, we use the Ising dynamics to guide the model to extract and utilize spatial relationships across locations and model the complex influence of granular information from real-world clinical evidence. By leveraging rich linked databases, including insurance claims, census information, and hospital resource usage data across the U.S., we evaluate the HOIST model on the large-scale spatiotemporal COVID-19 hospitalization prediction task for 2299 counties in the U.S. In the 4-week hospitalization prediction task, HOIST achieves 368.7 mean absolute error, 0.6 [Formula: see text] and 0.89 concordance correlation coefficient score on average. Our detailed number needed to treat (NNT) and cost analysis suggest that future COVID-19 vaccination efforts may be most impactful in rural areas. This model may serve as a resource for future county and state-level vaccination efforts.

摘要

在这项工作中,我们旨在通过开发时空预测模型来准确预测 COVID-19 大流行期间的住院人数。我们提出了 HOIST,这是一种基于伊辛动力学的深度学习模型,用于时空 COVID-19 住院预测。通过在统计力学中将位置与晶格位置进行类比,我们使用伊辛动力学来指导模型提取和利用位置之间的空间关系,并对来自真实世界临床证据的复杂粒度信息的影响进行建模。通过利用包括保险索赔、人口普查信息和美国医院资源使用数据在内的丰富关联数据库,我们在美国 2299 个县的大规模时空 COVID-19 住院预测任务上对 HOIST 模型进行了评估。在 4 周住院预测任务中,HOIST 的平均 MAE 为 368.7,[Formula: see text]为 0.6,一致性相关系数得分为 0.89。我们的详细治疗所需人数 (NNT) 和成本分析表明,未来 COVID-19 疫苗接种工作在农村地区可能最具影响力。该模型可以作为未来县和州一级疫苗接种工作的资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b900/10227006/51d03162e00f/41467_2023_38756_Fig7_HTML.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b900/10227006/51d03162e00f/41467_2023_38756_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b900/10227006/d643c9ab879d/41467_2023_38756_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b900/10227006/0eedd8c02af4/41467_2023_38756_Fig2_HTML.jpg
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