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美嗜唾液链球菌琼脂上培养的白色丝孢酵母(Geotrichum candidumLink (1809))和森林丝孢酵母(Geotrichum silvicola Pimenta (2005))的表型和分子遗传学研究。

Phenotypic and molecular genetics study of Geotrichum candidumLink (1809) and Geotrichum silvicola Pimenta (2005) cultivated on mitis salivarius agar.

机构信息

Department of Molecular Biology and Genetics, Faculty of Arts and Sciences, Uşak University, Uşak, 64200, Turkey.

Faculty of Agriculture, Department of Agricultural Biotechnology, Iğdır University, Iğdır, Turkey.

出版信息

Mol Biol Rep. 2023 Jul;50(7):6049-6061. doi: 10.1007/s11033-023-08443-z. Epub 2023 Jun 9.

Abstract

BACKGROUND

Geotrichum is a genus of fungi found in different habitats throughout the world. Although Geotrichum and its related species have been extensively reclassified and taxonomically revised, it is still the target for many researches.

METHODS AND RESULTS

In this study, phenotypic and molecular genetics comparisons were performed between Geotrichum candidum and Geotrichum silvicola. Mitis Salivarius Agar was used as the growing medium for the phenotypic comparison study, which was carried out at two temperatures (20-25 and 37 °C). For genotypic comparison, we compared the 18 S, ITS, and 28 S sequences of universal DNA barcode regions of both species. Important findings on the new culture media for fungal isolation were revealed by the results. The phenotypic variation between the two species' colonies, including their shapes, sizes, textures and growth rates, were strikingly different. DNA sequences of both species showed that pairwise identities of the species were 99.9% for 18 S, 100% for ITS and 99.6% for 28 S regions.

CONCLUSIONS

Contrary to what is commonly seen, the results showed that 18 S, ITS and 28 S failed to discriminate the species. The first investigation into the performance of Mitis Salivarius Agar as a fungus culture medium is reported in this work, and proved its efficiency. Additionally, this is the first study to compare G. candidum with G. silvicola by means of both phenotypic and genotypic analysis.

摘要

背景

地霉属真菌分布于世界各地的不同生境中。尽管地霉属及其相关种已被广泛重新分类和系统修订,但仍是许多研究的对象。

方法和结果

本研究对地霉属中白色地霉和木地霉进行了表型和分子遗传学比较。米氏琼脂被用作表型比较研究的生长培养基,在两个温度(20-25 和 37°C)下进行。为了进行基因型比较,我们比较了两个种的通用 DNA 条形码区域的 18S、ITS 和 28S 序列。结果揭示了真菌分离新培养基的重要发现。两种真菌的菌落形态、大小、质地和生长速度等表型差异非常明显。两种物种的 DNA 序列显示,18S 种间的序列同一性为 99.9%,ITS 为 100%,28S 为 99.6%。

结论

与常见情况相反,结果表明 18S、ITS 和 28S 无法区分这两个种。本研究首次报道了米氏琼脂作为真菌培养基的性能,证明了其效率。此外,这是首次通过表型和基因型分析比较白色地霉和木地霉的研究。

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