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基于代谢组学的生物标志物发现的统计方法和资源。

Statistical methods and resources for biomarker discovery using metabolomics.

机构信息

Research and Graduate Studies, Biomedical Research Center, Qatar University, P.O. Box 2713, Doha, Qatar.

Department of Human Genetics, Sidra Medicine, Doha, Qatar.

出版信息

BMC Bioinformatics. 2023 Jun 15;24(1):250. doi: 10.1186/s12859-023-05383-0.

Abstract

Metabolomics is a dynamic tool for elucidating biochemical changes in human health and disease. Metabolic profiles provide a close insight into physiological states and are highly volatile to genetic and environmental perturbations. Variation in metabolic profiles can inform mechanisms of pathology, providing potential biomarkers for diagnosis and assessment of the risk of contracting a disease. With the advancement of high-throughput technologies, large-scale metabolomics data sources have become abundant. As such, careful statistical analysis of intricate metabolomics data is essential for deriving relevant and robust results that can be deployed in real-life clinical settings. Multiple tools have been developed for both data analysis and interpretations. In this review, we survey statistical approaches and corresponding statistical tools that are available for discovery of biomarkers using metabolomics.

摘要

代谢组学是阐明人类健康和疾病中生化变化的有力工具。代谢谱提供了对生理状态的深入了解,并且对遗传和环境干扰高度敏感。代谢谱的变化可以为病理机制提供信息,为诊断和评估疾病风险提供潜在的生物标志物。随着高通量技术的进步,大规模代谢组学数据源变得丰富。因此,对复杂代谢组学数据进行仔细的统计分析对于得出可以在实际临床环境中应用的相关和稳健的结果至关重要。已经开发了多种工具来进行数据分析和解释。在这篇综述中,我们调查了使用代谢组学发现生物标志物的统计方法和相应的统计工具。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d0eb/10268468/128f84e71316/12859_2023_5383_Fig1_HTML.jpg

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