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从亚美尼亚蜜蜂肠道分离的亚种A4菌株的计算机益生菌基因组特征分析

In Silico Probiogenomic Characterization of subsp. A4 Strain Isolated from an Armenian Honeybee Gut.

作者信息

Bazukyan Inga, Georgieva-Miteva Dimitrina, Velikova Tsvetelina, Dimov Svetoslav G

机构信息

Faculty of Biology, Yerevan State University, Yerevan 0025, Armenia.

Faculty of Biology, Sofia University St. Kliment Ohridski, 8 Dragan Tzankov Str., 1164 Sofia, Bulgaria.

出版信息

Insects. 2023 Jun 9;14(6):540. doi: 10.3390/insects14060540.

Abstract

A ssp. strain named A4, isolated from the gut of an Armenian honeybee, was subjected to a probiogenomic characterization because of its unusual origin. A whole-genome sequencing was performed, and the bioinformatic analysis of its genome revealed a reduction in the genome size and the number of the genes-a process typical for the adaptation to endosymbiotic conditions. Further analysis of the genome revealed that ssp. strain named A4 could play the role of a probiotic endosymbiont because of the presence of intact genetic sequences determining antioxidant properties, exopolysaccharides synthesis, adhesion properties, and biofilm formation, as well as an antagonistic activity against some pathogens which is not due to pH or bacteriocins production. Additionally, the genomic analysis revealed significant potential for stress tolerance, such as extreme pH, osmotic stress, and high temperature. To our knowledge, this is the first report of a potentially endosymbiotic ssp. strain adapted to and playing beneficial roles for its host.

摘要

从一只亚美尼亚蜜蜂肠道中分离出的一个名为A4的亚种菌株,因其不寻常的来源而进行了益生菌基因组特征分析。进行了全基因组测序,对其基因组的生物信息学分析显示基因组大小和基因数量减少,这是适应内共生条件的典型过程。对基因组的进一步分析表明,名为A4的亚种菌株可能发挥益生菌内共生体的作用,因为存在决定抗氧化特性、胞外多糖合成、粘附特性和生物膜形成的完整基因序列,以及对某些病原体的拮抗活性,且这种活性并非由pH值或细菌素产生所致。此外,基因组分析显示该菌株具有显著的耐胁迫潜力,如极端pH值、渗透胁迫和高温。据我们所知,这是关于一种潜在的适应宿主并对宿主发挥有益作用的内共生亚种菌株的首次报道。

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