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基于嗜热四膜虫核酶的精确高效环状 RNA 合成系统。

A precise and efficient circular RNA synthesis system based on a ribozyme derived from Tetrahymena thermophila.

机构信息

The Key Laboratory of Geriatrics, Beijing Institute of Geriatrics, Institute of Geriatric Medicine, Chinese Academy of Medical Sciences, Beijing Hospital/National Center of Gerontology of National Health Commission, PR China.

Graduate School of Peking Union Medical College, Beijing 100730, PR China.

出版信息

Nucleic Acids Res. 2023 Aug 11;51(14):e78. doi: 10.1093/nar/gkad554.

Abstract

Classic strategies for circular RNA (circRNA) preparation always introduce large numbers of linear transcripts or extra nucleotides to the circularized product. In this study, we aimed to develop an efficient system for circRNA preparation based on a self-splicing ribozyme derived from an optimized Tetrahymena thermophila group Ⅰ intron. The target RNA sequence was inserted downstream of the ribozyme and a complementary antisense region was added upstream of the ribozyme to assist cyclization. Then, we compared the circularization efficiency of ribozyme or flanking intronic complementary sequence (ICS)-mediated methods through the DNMT1, CDR1as, FOXO3, and HIPK3 genes and found that the efficiency of our system was remarkably higher than that of flanking ICS-mediated method. Consequently, the circularized products mediated by ribozyme are not introduced with additional nucleotides. Meanwhile, the overexpressed circFOXO3 maintained its biological functions in regulating cell proliferation, migration, and apoptosis. Finally, a ribozyme-based circular mRNA expression system was demonstrated with a split green fluorescent protein (GFP) using an optimized Coxsackievirus B3 (CVB3) internal ribosome entry site (IRES) sequence, and this system achieved successful translation of circularized mRNA. Therefore, this novel, convenient, and rapid engineering RNA circularization system can be applied for the functional study and large-scale preparation of circular RNA in the future.

摘要

经典的环状 RNA(circRNA)制备策略通常会向环状产物中引入大量的线性转录本或额外的核苷酸。在这项研究中,我们旨在开发一种基于来自优化的嗜热四膜虫组 I 内含子的自我剪接核酶的高效 circRNA 制备系统。靶 RNA 序列被插入核酶的下游,并且核酶的上游添加了互补的反义区域以辅助环化。然后,我们通过 DNMT1、CDR1as、FOXO3 和 HIPK3 基因比较了核酶或侧翼内含子互补序列(ICS)介导的方法的环状化效率,发现我们的系统的效率明显高于侧翼 ICS 介导的方法。因此,核酶介导的环状化产物不会引入额外的核苷酸。同时,过表达的 circFOXO3 保持了其调节细胞增殖、迁移和凋亡的生物学功能。最后,使用优化的柯萨奇病毒 B3(CVB3)内部核糖体进入位点(IRES)序列,通过核酶构建了一个分裂绿色荧光蛋白(GFP)的环状 mRNA 表达系统,该系统实现了环状 mRNA 的成功翻译。因此,这种新型、方便、快速的工程 RNA 环状化系统可用于未来环状 RNA 的功能研究和大规模制备。

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