Crowley Liam, Allen Heather, Barnes Ian, Boyes Douglas, Broad Gavin R, Fletcher Christopher, Holland Peter W H, Januszczak Inez, Lawniczak Mara, Lewis Owen T, Macadam Craig R, Mulhair Peter O, Pereira da Conceicoa Lyndall, Price Benjamin W, Raper Chris, Sivell Olga, Sivess Laura
Biology, University of Oxford, Oxford, Oxfordshire, OX1 3SZ, UK.
Natural History Museum, London, SW7 5BD, UK.
Wellcome Open Res. 2023 Mar 20;8:123. doi: 10.12688/wellcomeopenres.18925.1. eCollection 2023.
The Darwin Tree of Life (DToL) project aims to sequence and assemble high-quality genomes from all eukaryote species in Britain and Ireland, with the first phase of the project concentrating on family-level coverage plus species of particular ecological, biomedical or evolutionary interest. We summarise the processes involved in (1) assessing the UK arthropod fauna and the status of individual species on UK lists; (2) prioritising and collecting species for initial genome sequencing; (3) handling methods to ensure that high-quality genomic DNA is preserved; and (4) compiling standard operating procedures for processing specimens for genome sequencing, identification verification and voucher specimen curation. We briefly explore some lessons learned from the pilot phase of DToL and the impact of the Covid-19 pandemic.
达尔文生命之树(DToL)项目旨在对英国和爱尔兰所有真核生物物种的高质量基因组进行测序和组装,该项目的第一阶段专注于科级别的覆盖范围以及具有特殊生态、生物医学或进化意义的物种。我们总结了以下过程:(1)评估英国节肢动物区系以及英国物种名录上各物种的状况;(2)对用于初始基因组测序的物种进行优先级排序和采集;(3)确保高质量基因组DNA得以保存的处理方法;(4)编制用于处理基因组测序、鉴定验证和凭证标本管理的标本的标准操作程序。我们简要探讨了从DToL试点阶段吸取的一些经验教训以及新冠疫情的影响。