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数学家的质粒指南:模型制作者的质粒生物学入门。

A mathematician's guide to plasmids: an introduction to plasmid biology for modellers.

机构信息

Research Group Stochastic Evolutionary Dynamics, Department of Theoretical Biology, Max Planck Institute for Evolutionary Biology, Plön, Germany.

出版信息

Microbiology (Reading). 2023 Jul;169(7). doi: 10.1099/mic.0.001362.

Abstract

Plasmids, extrachromosomal DNA molecules commonly found in bacterial and archaeal cells, play an important role in bacterial genetics and evolution. Our understanding of plasmid biology has been furthered greatly by the development of mathematical models, and there are many questions about plasmids that models would be useful in answering. In this review, we present an introductory, yet comprehensive, overview of the biology of plasmids suitable for modellers unfamiliar with plasmids who want to get up to speed and to begin working on plasmid-related models. In addition to reviewing the diversity of plasmids and the genes they carry, their key physiological functions, and interactions between plasmid and host, we also highlight selected plasmid topics that may be of particular interest to modellers and areas where there is a particular need for theoretical development. The world of plasmids holds a great variety of subjects that will interest mathematical biologists, and introducing new modellers to the subject will help to expand the existing body of plasmid theory.

摘要

质粒是一种常见于细菌和古菌细胞中的染色体外 DNA 分子,在细菌遗传学和进化中起着重要作用。数学模型的发展极大地促进了我们对质粒生物学的理解,并且有许多关于质粒的问题可以通过模型来回答。在这篇综述中,我们为不熟悉质粒但希望了解质粒并开始从事与质粒相关模型的模型构建者,提供了一个适合的质粒生物学简介,内容全面但不失简洁。除了回顾质粒的多样性及其携带的基因、它们的关键生理功能以及质粒与宿主之间的相互作用外,我们还重点介绍了一些可能特别引起模型构建者兴趣的质粒主题以及理论发展特别需要的领域。质粒世界拥有许多主题将引起数学生物学家的兴趣,向新的模型构建者介绍这个主题将有助于扩大现有的质粒理论体系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc36/10433428/5aedbe5dda0c/mic-169-1362-g001.jpg

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