开发一种用于计算机辅助核苷酸序列分析的卓越策略。
Development of a superior strategy for computer-assisted nucleotide sequence analysis.
作者信息
Burnett L
出版信息
Nucleic Acids Res. 1986 Jan 10;14(1):47-55. doi: 10.1093/nar/14.1.47.
Abstract
A new strategy for high-resolution nucleotide sequence analysis has been developed. The strategy involves an exhaustive tree-searching algorithm which examines all possible combinations of short regions of sequence alignments, followed by culling of unsuitable sequence relationships. The new algorithm can detect sequence homologies invisible to existing algorithms, and is capable of detecting all possible sequence relationships.
摘要
一种用于高分辨率核苷酸序列分析的新策略已被开发出来。该策略涉及一种详尽的树形搜索算法，该算法会检查序列比对短区域的所有可能组合，然后剔除不合适的序列关系。这种新算法能够检测现有算法无法察觉的序列同源性，并且能够检测所有可能的序列关系。
相似文献
1
Development of a superior strategy for computer-assisted nucleotide sequence analysis.开发一种用于计算机辅助核苷酸序列分析的卓越策略。
Nucleic Acids Res. 1986 Jan 10;14(1):47-55. doi: 10.1093/nar/14.1.47.
2
An exhaustive tree-searching algorithm for high-resolution computer-assisted nucleotide sequence analysis.一种用于高分辨率计算机辅助核苷酸序列分析的穷举树搜索算法。
Comput Appl Biosci. 1985 Sep;1(3):153-60. doi: 10.1093/bioinformatics/1.3.153.
3
The SEQANAL and SEQTALK programs: a new method of access to high-resolution nucleotide sequence comparison and analysis programs from a remote laboratory mini- or microcomputer.SEQANAL和SEQTALK程序：一种从远程实验室小型或微型计算机访问高分辨率核苷酸序列比较和分析程序的新方法。
Comput Appl Biosci. 1985 Dec;1(4):241-7. doi: 10.1093/bioinformatics/1.4.241.
4
Sequence search on a supercomputer.在超级计算机上进行序列搜索。
Nucleic Acids Res. 1986 Jan 10;14(1):57-64. doi: 10.1093/nar/14.1.57.
5
Utilization of sequence libraries on a 16-bit mini computer with particular reference to high speed searching.在16位小型计算机上对序列文库的利用，特别涉及高速搜索。
Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):409-16. doi: 10.1093/nar/12.1part1.409.
6
Automated sequence reading and analysis.自动序列读取与分析。
Nucleic Acids Res. 1988 Mar 11;16(5):1847-56. doi: 10.1093/nar/16.5.1847.
7
Should nucleotide sequence analyzing computer algorithms always extend homologies by extending homologies?核苷酸序列分析计算机算法是否总是通过延伸同源性来扩展同源性？
Nucleic Acids Res. 1986 Jan 10;14(1):425-30. doi: 10.1093/nar/14.1.425.
8
Algorithms for the search of amino acid patterns in nucleic acid sequences.用于在核酸序列中搜索氨基酸模式的算法。
Nucleic Acids Res. 1986 Jan 10;14(1):99-107. doi: 10.1093/nar/14.1.99.
9
GENEUS, a computer system for DNA and protein sequence analysis containing an information retrieval system for the EMBL data library.GENEUS是一个用于DNA和蛋白质序列分析的计算机系统，包含一个用于EMBL数据库的信息检索系统。
Nucleic Acids Res. 1986 Jan 10;14(1):273-84. doi: 10.1093/nar/14.1.273.
10
Personal access to sequence databases on personal computers.个人通过个人电脑访问序列数据库。
Nucleic Acids Res. 1986 Jan 10;14(1):611-9. doi: 10.1093/nar/14.1.611.
本文引用的文献
1
SEQ: a nucleotide sequence analysis and recombination system.SEQ：一种核苷酸序列分析与重组系统。
Nucleic Acids Res. 1982 Jan 11;10(1):279-94. doi: 10.1093/nar/10.1.279.
2
Complementary relationship between repetitive sequences in the SV40 early gene pre-promoter enhancing region and big-T antigen splice junction exons.SV40早期基因前启动子增强区域中重复序列与大T抗原剪接连接外显子之间的互补关系。
J Theor Biol. 1984 Oct 21;110(4):533-40. doi: 10.1016/s0022-5193(84)80143-5.
3
Improved estimation of secondary structure in ribonucleic acids.核糖核酸二级结构的改进估计。
Nat New Biol. 1973 Nov 14;246(150):40-1. doi: 10.1038/newbio246040a0.
4
Stability of ribonucleic acid double-stranded helices.核糖核酸双链螺旋的稳定性
J Mol Biol. 1974 Jul 15;86(4):843-53. doi: 10.1016/0022-2836(74)90357-x.
5
Method for predicting RNA secondary structure.预测RNA二级结构的方法。
Proc Natl Acad Sci U S A. 1975 Jun;72(6):2017-21. doi: 10.1073/pnas.72.6.2017.
6
Further procedures for sequence analysis by computer.计算机序列分析的进一步程序。
Nucleic Acids Res. 1978 Mar;5(3):1013-6. doi: 10.1093/nar/5.3.1013.
7
Sequence data handling by computer.计算机对序列数据的处理
Nucleic Acids Res. 1977 Nov;4(11):4037-51. doi: 10.1093/nar/4.11.4037.
8
Computer analysis of nucleic acid regulatory sequences.核酸调控序列的计算机分析。
Proc Natl Acad Sci U S A. 1977 Oct;74(10):4401-5. doi: 10.1073/pnas.74.10.4401.
Zotero 插件