菌株S2的全基因组序列，S2是从pH值为12的蛇纹石化系统中分离出的一种化能无机异养菌。
Complete genome sequence of sp. strain S2, a chemolithoheterotroph isolated from a pH 12 serpentinizing system.
作者信息
Trutschel Leah R, Rowe Annette R, Sackett Joshua D
机构信息
Department of Biological Sciences, University of Cincinnati , Cincinnati, Ohio, USA.
出版信息
Microbiol Resour Announc. 2023 Sep 19;12(9):e0028823. doi: 10.1128/MRA.00288-23. Epub 2023 Aug 16.
Abstract
Here, we report the complete genome sequence for sp. S2, a sulfur-oxidizing heterotroph isolated from a serpentinizing system in Northern California. The S2 genome is 4.4 Mb and contains 4,570 protein-encoding genes. This organism contains the genes necessary for sulfur species oxidation and complete ethylmalonyl and pentose phosphate pathways.
摘要
在此，我们报告了菌株S2的完整基因组序列，该菌株是从北加利福尼亚的一个蛇纹石化系统中分离出的一种硫氧化异养菌。S2基因组大小为4.4 Mb，包含4570个蛋白质编码基因。该生物体含有硫物种氧化以及完整的乙基丙二酸和磷酸戊糖途径所需的基因。
相似文献
1
Complete genome sequence of sp. strain S2, a chemolithoheterotroph isolated from a pH 12 serpentinizing system.菌株S2的全基因组序列，S2是从pH值为12的蛇纹石化系统中分离出的一种化能无机异养菌。
Microbiol Resour Announc. 2023 Sep 19;12(9):e0028823. doi: 10.1128/MRA.00288-23. Epub 2023 Aug 16.
2
Complete genome sequence of sp. strain M1, a thiosulfate-oxidizing bacterium isolated from a hyperalkaline serpentinizing system, Ney Springs.从超碱性蛇纹石化系统内伊泉分离出的硫代硫酸盐氧化细菌——菌株M1的全基因组序列
Microbiol Resour Announc. 2023 Nov 16;12(11):e0050823. doi: 10.1128/MRA.00508-23. Epub 2023 Oct 31.
3
Investigation of microbial metabolisms in an extremely high pH marine-like terrestrial serpentinizing system: Ney Springs.调查一种极酸海洋样陆地蛇纹石化系统（奈泉）中的微生物代谢作用
Sci Total Environ. 2022 Aug 25;836:155492. doi: 10.1016/j.scitotenv.2022.155492. Epub 2022 Apr 25.
4
Microbial diversity in The Cedars, an ultrabasic, ultrareducing, and low salinity serpentinizing ecosystem.雪松溪的微生物多样性：一个超碱性、超还原、低盐度的蛇纹石化生态系统
Proc Natl Acad Sci U S A. 2013 Sep 17;110(38):15336-41. doi: 10.1073/pnas.1302426110. Epub 2013 Sep 3.
5
Determining resident microbial community members and their correlations with geochemistry in a serpentinizing spring.确定蛇纹石化泉水中的常驻微生物群落成员及其与地球化学的相关性。
Front Microbiol. 2023 Jun 15;14:1182497. doi: 10.3389/fmicb.2023.1182497. eCollection 2023.
6
Sulfurimonas sediminis sp. nov., a novel hydrogen- and sulfur-oxidizing chemolithoautotroph isolated from a hydrothermal vent at the Longqi system, southwestern Indian ocean.硫单胞菌属Sediminis 种，一种新型的氢和硫氧化化能自养微生物，从西南印度洋龙区系统的一个热液喷口分离得到。
Antonie Van Leeuwenhoek. 2021 Jun;114(6):813-822. doi: 10.1007/s10482-021-01560-4. Epub 2021 Mar 19.
7
Complete Genome Sequence of sp. Strain FeN2, a Novel Cathode-Oxidizing Bacterium Isolated from Catalina Harbor Sediments.从卡特琳娜港沉积物中分离出的新型阴极氧化细菌铁氮单胞菌属菌株FeN2的全基因组序列
Microbiol Resour Announc. 2021 Nov 18;10(46):e0086221. doi: 10.1128/MRA.00862-21.
8
9
A dynamic microbial sulfur cycle in a serpentinizing continental ophiolite.蛇纹石化大陆蛇绿岩中的动态微生物硫循环。
Environ Microbiol. 2020 Jun;22(6):2329-2345. doi: 10.1111/1462-2920.15006. Epub 2020 Apr 21.
10
Comparative Metagenomics Highlight a Widespread Pathway Involved in Catabolism of Phosphonates in Marine and Terrestrial Serpentinizing Ecosystems.比较宏基因组学强调了海洋和陆地蛇纹石化生态系统中参与膦酸盐分解代谢的广泛途径。
mSystems. 2022 Aug 30;7(4):e0032822. doi: 10.1128/msystems.00328-22. Epub 2022 Aug 1.
引用本文的文献
1
Viromic and Metagenomic Analyses of Commercial Spirulina Fermentations Reveal Remarkable Microbial Diversity.商业螺旋藻发酵的病毒组学和宏基因组分析揭示了惊人的微生物多样性。
Viruses. 2024 Jun 27;16(7):1039. doi: 10.3390/v16071039.
本文引用的文献
1
Investigation of microbial metabolisms in an extremely high pH marine-like terrestrial serpentinizing system: Ney Springs.调查一种极酸海洋样陆地蛇纹石化系统（奈泉）中的微生物代谢作用
Sci Total Environ. 2022 Aug 25;836:155492. doi: 10.1016/j.scitotenv.2022.155492. Epub 2022 Apr 25.
2
A dynamic microbial sulfur cycle in a serpentinizing continental ophiolite.蛇纹石化大陆蛇绿岩中的动态微生物硫循环。
Environ Microbiol. 2020 Jun;22(6):2329-2345. doi: 10.1111/1462-2920.15006. Epub 2020 Apr 21.
3
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database.GTDB-Tk：一个使用基因组分类数据库对基因组进行分类的工具包。
Bioinformatics. 2019 Nov 15;36(6):1925-7. doi: 10.1093/bioinformatics/btz848.
4
Assembly of long, error-prone reads using repeat graphs.使用重复图组装长的、易错的读取。
Nat Biotechnol. 2019 May;37(5):540-546. doi: 10.1038/s41587-019-0072-8. Epub 2019 Apr 1.
5
KBase: The United States Department of Energy Systems Biology Knowledgebase.KBase：美国能源部系统生物学知识库。
Nat Biotechnol. 2018 Jul 6;36(7):566-569. doi: 10.1038/nbt.4163.
6
NanoPack: visualizing and processing long-read sequencing data.NanoPack：可视化和处理长读测序数据。
Bioinformatics. 2018 Aug 1;34(15):2666-2669. doi: 10.1093/bioinformatics/bty149.
7
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
8
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.CheckM：评估从分离株、单细胞和宏基因组中获得的微生物基因组质量。
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
9
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.Pilon：一种用于全面微生物变异检测和基因组组装改进的集成工具。
PLoS One. 2014 Nov 19;9(11):e112963. doi: 10.1371/journal.pone.0112963. eCollection 2014.
10
Extrachromosomal, extraordinary and essential--the plasmids of the Roseobacter clade.染色体外的、非凡的和必不可少的——玫瑰杆菌群的质粒。
Appl Microbiol Biotechnol. 2013 Apr;97(7):2805-15. doi: 10.1007/s00253-013-4746-8. Epub 2013 Feb 24.
Zotero 插件