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基于掩码自动编码器的自监督学习在新冠肺炎胸部X光图像分类中的应用

Self-Supervised Learning Application on COVID-19 Chest X-ray Image Classification Using Masked AutoEncoder.

作者信息

Xing Xin, Liang Gongbo, Wang Chris, Jacobs Nathan, Lin Ai-Ling

机构信息

Department of Computer Science, University of Kentucky, Lexington, KY 40506, USA.

Department of Radiology, University of Missouri, Columbia, MO 65212, USA.

出版信息

Bioengineering (Basel). 2023 Jul 29;10(8):901. doi: 10.3390/bioengineering10080901.

Abstract

The COVID-19 pandemic has underscored the urgent need for rapid and accurate diagnosis facilitated by artificial intelligence (AI), particularly in computer-aided diagnosis using medical imaging. However, this context presents two notable challenges: high diagnostic accuracy demand and limited availability of medical data for training AI models. To address these issues, we proposed the implementation of a Masked AutoEncoder (MAE), an innovative self-supervised learning approach, for classifying 2D Chest X-ray images. Our approach involved performing imaging reconstruction using a Vision Transformer (ViT) model as the feature encoder, paired with a custom-defined decoder. Additionally, we fine-tuned the pretrained ViT encoder using a labeled medical dataset, serving as the backbone. To evaluate our approach, we conducted a comparative analysis of three distinct training methods: training from scratch, transfer learning, and MAE-based training, all employing COVID-19 chest X-ray images. The results demonstrate that MAE-based training produces superior performance, achieving an accuracy of 0.985 and an AUC of 0.9957. We explored the mask ratio influence on MAE and found ratio = 0.4 shows the best performance. Furthermore, we illustrate that MAE exhibits remarkable efficiency when applied to labeled data, delivering comparable performance to utilizing only 30% of the original training dataset. Overall, our findings highlight the significant performance enhancement achieved by using MAE, particularly when working with limited datasets. This approach holds profound implications for future disease diagnosis, especially in scenarios where imaging information is scarce.

摘要

新冠疫情凸显了借助人工智能(AI)实现快速准确诊断的迫切需求,尤其是在利用医学影像进行计算机辅助诊断方面。然而,这种情况带来了两个显著挑战:对诊断准确性的高要求以及用于训练AI模型的医学数据有限。为解决这些问题,我们提出采用掩码自动编码器(MAE),这是一种创新的自监督学习方法,用于对二维胸部X光图像进行分类。我们的方法包括使用视觉Transformer(ViT)模型作为特征编码器进行成像重建,并与自定义解码器配对。此外,我们使用标记的医学数据集对预训练的ViT编码器进行微调,作为主干。为评估我们的方法,我们对三种不同的训练方法进行了比较分析:从头开始训练、迁移学习和基于MAE的训练,所有方法均使用新冠胸部X光图像。结果表明,基于MAE的训练表现更优,准确率达到0.985,曲线下面积(AUC)为0.9957。我们探讨了掩码比例对MAE的影响,发现比例 = 0.4时表现最佳。此外,我们还表明,MAE应用于标记数据时效率显著,其性能与仅使用原始训练数据集的30%相当。总体而言,我们的研究结果突出了使用MAE所实现的显著性能提升,尤其是在处理有限数据集时。这种方法对未来疾病诊断具有深远意义,特别是在成像信息稀缺的情况下。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f89c/10451788/370b63c49ec3/bioengineering-10-00901-g001.jpg

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