School of Medicine, Nankai University, Tianjin 300071, China.
Department of Gastroenterology and Hepatology, Tianjin Medical University General Hospital, Tianjin Institute of Digestive Diseases, Tianjin Key Laboratory of Digestive Diseases, Tianjin 300052, China.
Int J Mol Sci. 2023 Aug 18;24(16):12915. doi: 10.3390/ijms241612915.
Disulfidptosis, a novel form of regulated cell death (RCD) associated with metabolism, represents a promising intervention target in cancer therapy. While abnormal lncRNA expression is associated with colon cancer development, the prognostic potential and biological characteristics of disulfidptosis-related lncRNAs (DRLs) remain unclear. Consequently, the research aimed to discover a novel indication of DRLs with significant prognostic implications, and to investigate their possible molecular role in the advancement of colon cancer. Here, we acquired RNA-seq data, pertinent clinical data, and genomic mutations of colon adenocarcinoma (COAD) from the TCGA database, and then DRLs were determined through Pearson correlation analysis. A total of 434 COAD patients were divided in to three subgroups through clustering analysis based on DRLs. By utilizing univariate Cox regression, the least absolute shrinkage and selection operator (LASSO) algorithm, and multivariate Cox regression analysis, we ultimately created a prognostic model consisting of four DRLs (AC007728.3, AP003555.1, ATP2B1.AS1, and NSMCE1.DT), and an external database was used to validate the prognostic features of the risk model. According to the Kaplan-Meier curve analysis, patients in the low-risk group exhibited a considerably superior survival time in comparison to those in the high-risk group. Enrichment analysis revealed a significant association between metabolic processes and the genes that were differentially expressed in the high- and low-risk groups. Additionally, significant differences in the tumor immune microenvironment landscape were observed, specifically pertaining to immune cells, function, and checkpoints. High-risk patients exhibited a low likelihood of immune evasion, as indicated by the Tumor Immune Dysfunction and Exclusion (TIDE) analysis. Patients who exhibit both a high risk and high Tumor Mutational Burden (TMB) experience the least amount of time for survival, whereas those belonging to the low-risk and low-TMB category demonstrate the most favorable prognosis. In addition, the risk groups determined by the 4-DRLs signature displayed distinct drug sensitivities. Finally, we confirmed the levels of expression for four DRLs through rt-qPCR in both tissue samples from colon cancer patients and cell lines. Taken together, the first 4-DRLs-based signature we proposed may serve for a hopeful instrument for forecasting the prognosis, immune landscape, and therapeutic responses in colon cancer patients, thereby facilitating optimal clinical decision-making.
二硫键程序性细胞死亡(Disulfidptosis)是一种与代谢相关的新型调控性细胞死亡(RCD)形式,是癌症治疗中很有前途的干预靶点。虽然异常的长链非编码 RNA(lncRNA)表达与结肠癌的发生发展有关,但目前尚不清楚与二硫键程序性细胞死亡相关的 lncRNA(DRLs)的预后潜力和生物学特征。因此,本研究旨在发现具有显著预后意义的新型 DRLs 标志物,并探讨其在结肠癌进展中的可能分子作用。
在这里,我们从 TCGA 数据库中获取了 RNA-seq 数据、相关临床数据和结肠腺癌(COAD)的基因组突变,并通过 Pearson 相关性分析确定了 DRLs。通过聚类分析,将 434 例 COAD 患者分为三个亚组。通过单因素 Cox 回归、最小绝对值收缩和选择算子(LASSO)算法以及多因素 Cox 回归分析,我们最终创建了一个由四个 DRLs(AC007728.3、AP003555.1、ATP2B1.AS1 和 NSMCE1.DT)组成的预后模型,并使用外部数据库验证了风险模型的预后特征。
根据 Kaplan-Meier 曲线分析,低风险组的患者生存时间明显优于高风险组。富集分析表明,代谢过程与高、低风险组中差异表达的基因之间存在显著关联。此外,肿瘤免疫微环境景观也存在显著差异,特别是免疫细胞、功能和检查点。TIDE 分析表明,高风险患者的免疫逃逸可能性较低。具有高风险和高肿瘤突变负担(TMB)的患者的生存时间最短,而属于低风险和低-TMB 类别的患者的预后最佳。此外,由 4-DRLs 特征确定的风险组显示出不同的药物敏感性。最后,我们通过 rt-qPCR 在结肠癌患者的组织样本和细胞系中验证了四个 DRLs 的表达水平。
综上所述,我们首次提出的基于 4-DRLs 的特征可能为预测结肠癌患者的预后、免疫景观和治疗反应提供一种有希望的工具,从而促进最佳的临床决策。