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通过基于液滴的流体系统中的可编程组装来处理 DNA 存储。

Processing DNA Storage through Programmable Assembly in a Droplet-Based Fluidics System.

机构信息

Standard Bioelectronics. Co., 511 Michuhol Tower, Gaetbeol-ro 12, Incheon, 21999, South Korea.

Department of Nano-Bioengineering, Incheon National University, Academy-ro 119, Incheon, 22012, South Korea.

出版信息

Adv Sci (Weinh). 2023 Nov;10(32):e2303197. doi: 10.1002/advs.202303197. Epub 2023 Sep 26.

Abstract

DNA can be used to store digital data, and synthetic short-sequence DNA pools are developed to store high quantities of digital data. However, synthetic DNA data cannot be actively processed in DNA pools. An active DNA data editing process is developed using splint ligation in a droplet-controlled fluidics (DCF) system. DNA fragments of discrete sizes (100-500 bps) are synthesized for droplet assembly, and programmed sequence information exchange occurred. The encoded DNA sequences are processed in series and parallel to synthesize the determined DNA pools, enabling random access using polymerase chain reaction amplification. The sequencing results of the assembled DNA data pools can be orderly aligned for decoding and have high fidelity through address primer scanning. Furthermore, eight 90 bps DNA pools with pixel information (png: 0.27-0.28 kB), encoded by codons, are synthesized to create eight 270 bps DNA pools with an animation movie chip file (mp4: 12 kB) in the DCF system.

摘要

DNA 可用于存储数字数据,并且开发了合成短序列 DNA 池来存储大量数字数据。然而,合成 DNA 数据不能在 DNA 池中主动处理。使用在液滴控制流控 (DCF) 系统中的衔接物连接开发了主动 DNA 数据编辑过程。为液滴组装合成离散大小 (100-500 bps) 的 DNA 片段,并发生编程序列信息交换。经编码的 DNA 序列被串联和并行处理以合成确定的 DNA 池,从而能够使用聚合酶链反应扩增进行随机访问。组装的 DNA 数据池的测序结果可以通过地址引物扫描进行有序排列以解码,并具有高保真度。此外,通过密码子编码合成了具有像素信息(png:0.27-0.28 kB)的八个 90 bps DNA 池,以在 DCF 系统中创建具有动画电影芯片文件 (mp4:12 kB) 的八个 270 bps DNA 池。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6f38/10646262/1f695bd13a59/ADVS-10-2303197-g004.jpg

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