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sp. nov.,分离自西太平洋表层海水,将 归入 属,作为新的学名,并对 属的描述进行了修正。

sp. nov., isolated from surface seawater of the western Pacific Ocean and transfer of to the genus as nom. nov. and emended description of the genus .

机构信息

Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of China; State Key Laboratory Breeding Base of Marine Genetic Resources; Key Laboratory of Marine Genetic Resources of Fujian Province, Xiamen 361005, PR China.

出版信息

Int J Syst Evol Microbiol. 2023 Oct;73(20). doi: 10.1099/ijsem.0.006078.

DOI:10.1099/ijsem.0.006078
PMID:37801073
Abstract

Two Gram-stain-negative, non-motile, non-spore-forming, strictly aerobic and rod-shaped bacterial strains, CMA-7 and CAA-3, were isolated from surface seawater samples collected from the western Pacific Ocean. Phylogeny of 16S rRNA gene sequences indicated they were related to the genera and and shared 95.1, 90.9 and 90.8% sequence similarity with Mok-17, DSM 19592 and ck-I2-15, respectively. Phylogenomic analysis showed that the two strains, together with the members of the genera and , formed a monophyletic clade that could also be considered a monophyletic taxon. This distinctiveness was supported by amino acid identity and percentage of conserved proteins indices, phenotypic and chemotaxonomic characteristics and comparative genomics analysis. Digital DNA‒DNA hybridization values and average nucleotide identities between the two strains and their closest relatives were 18.0-20.8 % and 77.7-79.3 %, respectively. The principal fatty acids were iso-C, iso-C 3-OH, iso-C G, Summed Feature 3 (C 7/C c or C cC1 c), Summed Feature 9 (iso-C c or C 10-methyl), and C 3-OH. The predominant respiratory quinone was MK-6. The polar lipids were phosphatidylethanolamine, aminolipid, aminophospholipid, phospholipid, phosphoglycolipid, glycolipid and unknown polar lipid. The genomic DNA G+C content of strains CMA-7 and CAA-3 was both 38.4 mol%. Genomic analysis indicated they have the potential to degrade cellulose and chitin. Based on the polyphasic evidence presented in this study, the two strains represent a novel species within the genus , for which the name sp. nov. is proposed. The type strain is CMA-7 (=MCCC M28999 = KCTC 92588). Moreover, the transfer of to the genus as nom. nov. (type strain En5 = KCTC 12518 = DSM 19592=CGMCC 1.6973) is also proposed.

摘要

两株革兰氏阴性、非运动、非孢子形成、严格需氧的杆状细菌 CMA-7 和 CAA-3 从取自西太平洋的海水样本中分离得到。16S rRNA 基因序列的系统发育分析表明,它们与属 和 有关,与 Mok-17、DSM 19592 和 ck-I2-15 的序列相似性分别为 95.1%、90.9%和 90.8%。系统基因组分析表明,这两株菌与属 的其他成员一起形成了一个单系群,也可以被视为一个单系分类群。氨基酸同一性和保守蛋白指数、表型和化学分类特征以及比较基因组学分析支持了这种独特性。两株菌与其最接近的亲缘关系之间的数字 DNA-DNA 杂交值和平均核苷酸同一性分别为 18.0-20.8%和 77.7-79.3%。主要脂肪酸为 iso-C、iso-C 3-OH、iso-C G、Summed Feature 3(C 7/C c 或 C cC1 c)、Summed Feature 9(iso-C c 或 C 10-methyl)和 C 3-OH。主要呼吸醌为 MK-6。极性脂类为磷脂酰乙醇胺、胺脂、胺磷脂、磷脂、磷糖脂、糖脂和未知极性脂类。菌株 CMA-7 和 CAA-3 的基因组 DNA G+C 含量均为 38.4 mol%。基因组分析表明它们具有降解纤维素和几丁质的能力。基于本研究提供的多相证据,这两株菌代表了属内的一个新种,命名为 sp. nov.。模式菌株为 CMA-7(=MCCC M28999 = KCTC 92588)。此外,还提议将 En5 转移到属中作为 nom. nov.(模式菌株 En5 = KCTC 12518 = DSM 19592=CGMCC 1.6973)。

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