Saputro Anjar Hermadi, Amelia Tasia, Mahardhika Andhika Bintang, Widyawaruyanti Aty, Wahyuni Tutik Sri, Permanasari Adita Ayu, Artarini Aluicia Anita, Tjahjono Daryono Hadi, Damayanti Sophi
Department of Pharmacochemistry, School of Pharmacy, Institut Teknologi Bandung, 40132, Indonesia.
Department of Pharmacy, Institut Teknologi Sumatera, 35365, Indonesia.
Heliyon. 2023 Sep 15;9(9):e20141. doi: 10.1016/j.heliyon.2023.e20141. eCollection 2023 Sep.
Hepatitis C is still a serious liver case of health. Up to now the development of anti-Hepatitis C Virus (HCV) drugs is challenging, especially the development of natural material compounds as anti-HCV. In the present study, we evaluated the probability of α-mangostin, piperine, and β-sitosterol as anti-HCV with the in silico and in vitro approaches. Molecular docking was performed between nonstructural protein 5B (NS5B, PDB ID 3FQL) with α-mangostin, piperine, and β-sitosterol by Autodock Tools® and BIOVIA Discovery Studio®. Subsequently, molecular dynamics simulations were conducted for 200 ns, evaluating the dynamic interaction between the ligands and the viral protein NS5B. Furthermore, compound characterization at the hepatocarcinoma cell line was employed. α-Mangostin with NS5B complex demonstrated the most negative binding free energy value based on MM-PBSA calculation with a value of -9.13 kcal/mol. In vitro test showed that IC of α -mangostin was 2.70 ± 0.92 μM, IC of piperine was 52.18 ± 3.21 μM, IC of β-sitosterol was >100 μM. α-Mangostin can serve as a valuable lead compound for further development of the anti-HCV.
丙型肝炎仍然是一种严重的肝脏健康疾病。到目前为止,抗丙型肝炎病毒(HCV)药物的研发具有挑战性,尤其是天然物质化合物作为抗HCV药物的研发。在本研究中,我们通过计算机模拟和体外实验方法评估了α-山竹黄酮、胡椒碱和β-谷甾醇作为抗HCV药物的可能性。使用Autodock Tools®和BIOVIA Discovery Studio®对非结构蛋白5B(NS5B,PDB ID 3FQL)与α-山竹黄酮、胡椒碱和β-谷甾醇进行分子对接。随后,进行了200纳秒的分子动力学模拟,评估配体与病毒蛋白NS5B之间的动态相互作用。此外,还对肝癌细胞系进行了化合物表征。基于MM-PBSA计算,α-山竹黄酮与NS5B复合物显示出最负的结合自由能值,为-9.13千卡/摩尔。体外试验表明,α-山竹黄酮的半数抑制浓度(IC)为2.70±0.92微摩尔,胡椒碱的IC为52.18±3.21微摩尔,β-谷甾醇的IC>100微摩尔。α-山竹黄酮可作为进一步开发抗HCV药物的有价值的先导化合物。