Zhang Hai-Bo, Pan Jian-Yan, Zhu Tao
Department of Pharmacy, Hangzhou Women's Hospital, Hangzhou Maternity and Child Health Care Hospital, Hangzhou, China.
Department of Birth Health and Genetics, The Reproductive Hospital of Guangxi Zhuang Autonomous Region, Nanning, China.
Front Pharmacol. 2023 Sep 25;14:1254119. doi: 10.3389/fphar.2023.1254119. eCollection 2023.
Lung adenocarcinoma (LUAD) is the major subtype of lung cancer and has a poor prognosis. Disulfidptosis is a novel regulated cell death form characterized by aberrant disulfide stress and actin network collapse. This study aimed to identify disulfidptosis-related lncRNAs, and predict LUAD patients' prognosis and response to antitumor therapies by establishing a disulfidptosis-related lncRNA model. Transcriptome and clinical data of LUAD patients were obtained from the TCGA database. Pearson correlation and Cox regression analysis was used to identify disulfidptosis-related lncRNAs associated with overall survival. LASSO regression analysis was adopted to construct the prognostic model. GO, KEGG and GSEA analysis was used to identify cellular pathways related to this model. Immune cell infiltration was investigated by ESTIMATE and CIBERSORT algorithms. Tumor mutational burden (TMB) and its association with model-derived risk score were analyzed using simple nucleotide variation data. Patients' response to immunotherapy and other antineoplastic drugs was predicted by the TIDE algorithm and GDSC tool, respectively. We identified 127 disulfidptosis-related lncRNAs, and a prognostic model that consists eight of them (KTN1-AS1, AL365181.3, MANCR, LINC01352, AC090559.1, AC093673.1, AP001094.3, and MHENCR) was established and verified. The prognostic model could stratify LUAD patients into two distinct risk-score groups. A high risk score was an independent prognosis factor indicating poor overall survival, and correlated with reduced immune cell infiltration, high TMB, and lower activity of tumor immune response. Immune checkpoint blockade might bring more survival benefits to the high-risk LUAD patients, whereas low-risk patients might be more responsive to targeted therapy and diverse kinase inhibitors. We established a disulfidptosis-related lncRNA model that can be exploited to predict the prognosis, tumor mutational burden, immune cell infiltration landscape, and response to immunotherapy and targeted therapy in LUAD patients.
肺腺癌(LUAD)是肺癌的主要亚型,预后较差。二硫化物诱导的细胞死亡是一种新型的程序性细胞死亡形式,其特征是异常的二硫键应激和肌动蛋白网络崩溃。本研究旨在鉴定与二硫化物诱导的细胞死亡相关的长链非编码RNA(lncRNA),并通过建立一个与二硫化物诱导的细胞死亡相关的lncRNA模型来预测LUAD患者的预后及对抗肿瘤治疗的反应。从TCGA数据库中获取LUAD患者的转录组和临床数据。采用Pearson相关性分析和Cox回归分析来鉴定与总生存期相关的二硫化物诱导的细胞死亡相关lncRNA。采用LASSO回归分析构建预后模型。利用GO、KEGG和GSEA分析来鉴定与该模型相关的细胞通路。通过ESTIMATE和CIBERSORT算法研究免疫细胞浸润情况。利用单核苷酸变异数据来分析肿瘤突变负荷(TMB)及其与模型衍生风险评分的相关性。分别通过TIDE算法和GDSC工具预测患者对免疫治疗和其他抗肿瘤药物的反应。我们鉴定出了127个与二硫化物诱导的细胞死亡相关的lncRNA,并建立并验证了一个由其中8个lncRNA组成的预后模型(KTN1-AS1、AL365181.3、MANCR、LINC01352、AC090559.1、AC093673.1、AP001094.3和MHENCR)。该预后模型可将LUAD患者分为两个不同的风险评分组。高风险评分是总生存期较差的独立预后因素,并且与免疫细胞浸润减少、高TMB和较低的肿瘤免疫反应活性相关。免疫检查点阻断可能会给高风险LUAD患者带来更多生存益处,而低风险患者可能对靶向治疗和多种激酶抑制剂更敏感。我们建立了一个与二硫化物诱导的细胞死亡相关的lncRNA模型,可用于预测LUAD患者的预后、肿瘤突变负荷、免疫细胞浸润情况以及对免疫治疗和靶向治疗的反应。