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通过染色质免疫沉淀测序技术对猪骨骼肌成纤维细胞中MAMSTR转录因子结合位点进行全基因组分析

Genome-Wide Analysis of MAMSTR Transcription Factor-Binding Sites via ChIP-Seq in Porcine Skeletal Muscle Fibroblasts.

作者信息

Li Chenlei, Zhang Zhe, Wei Yilin, Qi Kunlong, Dou Yaqing, Song Chenglei, Liu Yingke, Li Xinjian, Li Xiuling, Wang Kejun, Qiao Ruimin, Yang Feng, Han Xuelei

机构信息

College of Animal Science and Technology, Henan Agricultural University, Zhengzhou 450002, China.

出版信息

Animals (Basel). 2023 May 23;13(11):1731. doi: 10.3390/ani13111731.

Abstract

Myocyte enhancer factor-2-activating motif and SAP domain-containing transcriptional regulator () regulates its downstream through binding in its promoter regions. However, its molecular mechanism, particularly the DNA-binding sites, and coregulatory genes are quite unexplored. Therefore, to identify the genome-wide binding sites of the transcription factors and their coregulatory genes, chromatin immunoprecipitation sequencing was carried out. The results showed that was associated with 1506 peaks, which were annotated as 962 different genes. Most of these genes were involved in transcriptional regulation, metabolic pathways, and cell development and differentiation, such as AMPK signaling pathway, TGF-beta signaling pathway, transcription coactivator activity, transcription coactivator binding, adipocytokine signaling pathway, fat digestion and absorption, skeletal muscle fiber development, and skeletal muscle cell differentiation. Lastly, the expression levels and transcriptional activities of , , , , and were screened and verified via functional markers and analysis. Overall, this study has increased our understanding of the regulatory mechanism of during skeletal muscle fibroblast development and provided a reference for analyzing muscle development mechanisms.

摘要

含有肌细胞增强因子2激活基序和SAP结构域的转录调节因子()通过结合其启动子区域来调控其下游基因。然而,其分子机制,特别是DNA结合位点和共调节基因尚未得到充分研究。因此,为了鉴定该转录因子的全基因组结合位点及其共调节基因,进行了染色质免疫沉淀测序。结果表明,该转录因子与1506个峰相关联,这些峰被注释为962个不同的基因。这些基因大多参与转录调控、代谢途径以及细胞发育和分化,如AMPK信号通路、TGF-β信号通路、转录共激活因子活性、转录共激活因子结合、脂肪细胞因子信号通路、脂肪消化与吸收、骨骼肌纤维发育以及骨骼肌细胞分化。最后,通过功能标记和分析筛选并验证了该转录因子、、、和的表达水平及转录活性。总体而言,本研究增进了我们对该转录因子在骨骼肌成纤维细胞发育过程中调控机制的理解,并为分析肌肉发育机制提供了参考。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/12e8/10252000/35a07678e743/animals-13-01731-g001.jpg

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