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通过过滤辅助样品制备蛋白质组学表征揭示人羊膜间充质基质细胞分泌组的分子特征。

Disclosing the molecular profile of the human amniotic mesenchymal stromal cell secretome by filter-aided sample preparation proteomic characterization.

机构信息

Istituto di Scienze e Tecnologie Chimiche (SCITEC) ''Giulio Natta'', Consiglio Nazionale delle Ricerche, Rome, Italy.

Department of Life Science and Public Health, Università Cattolica del Sacro Cuore, Rome, Italy.

出版信息

Stem Cell Res Ther. 2023 Nov 27;14(1):339. doi: 10.1186/s13287-023-03557-4.

DOI:10.1186/s13287-023-03557-4
PMID:38012707
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10683150/
Abstract

BACKGROUND

The secretome of mesenchymal stromal cells isolated from the amniotic membrane (hAMSCs) has been extensively studied for its in vitro immunomodulatory activity as well as for the treatment of several preclinical models of immune-related disorders. The bioactive molecules within the hAMSCs secretome are capable of modulating the immune response and thus contribute to stimulating regenerative processes. At present, only a few studies have attempted to define the composition of the secretome, and several approaches, including multi-omics, are underway in an attempt to precisely define its composition and possibly identify key factors responsible for the therapeutic effect.

METHODS

In this study, we characterized the protein composition of the hAMSCs secretome by a filter-aided sample preparation (FASP) digestion and liquid chromatography-high resolution mass spectrometry (LC-MS) approach. Data were processed for gene ontology classification and functional protein interaction analysis by bioinformatics tools.

RESULTS

Proteomic analysis of the hAMSCs secretome resulted in the identification of 1521 total proteins, including 662 unique elements. A number of 157 elements, corresponding to 23.7%, were found as repeatedly characterizing the hAMSCs secretome, and those that resulted as significantly over-represented were involved in immunomodulation, hemostasis, development and remodeling of the extracellular matrix molecular pathways.

CONCLUSIONS

Overall, our characterization enriches the landscape of hAMSCs with new information that could enable a better understanding of the mechanisms of action underlying the therapeutic efficacy of the hAMSCs secretome while also providing a basis for its therapeutic translation.

摘要

背景

从羊膜中分离的间充质基质细胞(hAMSCs)的分泌组在体外具有免疫调节活性,并已被广泛研究用于治疗几种免疫相关疾病的临床前模型。hAMSCs 分泌组中的生物活性分子能够调节免疫反应,从而有助于刺激再生过程。目前,只有少数研究试图定义分泌组的组成,并且正在采用包括多组学在内的几种方法来尝试精确定义其组成,并可能确定负责治疗效果的关键因素。

方法

在这项研究中,我们通过过滤辅助样品制备(FASP)消化和液相色谱-高分辨率质谱(LC-MS)方法来表征 hAMSCs 分泌组的蛋白质组成。通过生物信息学工具对数据进行基因本体分类和功能蛋白相互作用分析。

结果

hAMSCs 分泌组的蛋白质组学分析鉴定出 1521 种总蛋白,包括 662 种独特成分。有 157 种元素被发现作为 hAMSCs 分泌组的特征性元素,占 23.7%,这些元素与免疫调节、止血、细胞外基质分子途径的发育和重塑有关。

结论

总体而言,我们的特征丰富了 hAMSCs 的信息,这可以帮助更好地理解 hAMSCs 分泌组治疗效果的作用机制,同时为其治疗转化提供基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f43/10683150/388ea84fcbc8/13287_2023_3557_Fig9_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f43/10683150/9d1dd6df0759/13287_2023_3557_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f43/10683150/1024c4c45225/13287_2023_3557_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f43/10683150/73bb17fd84e9/13287_2023_3557_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f43/10683150/f393f1d8703f/13287_2023_3557_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f43/10683150/fe3464cbace3/13287_2023_3557_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f43/10683150/95804b662ce4/13287_2023_3557_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f43/10683150/be14b82c2ccb/13287_2023_3557_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f43/10683150/374454ea9bb3/13287_2023_3557_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f43/10683150/388ea84fcbc8/13287_2023_3557_Fig9_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f43/10683150/9d1dd6df0759/13287_2023_3557_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f43/10683150/1024c4c45225/13287_2023_3557_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f43/10683150/73bb17fd84e9/13287_2023_3557_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f43/10683150/f393f1d8703f/13287_2023_3557_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f43/10683150/fe3464cbace3/13287_2023_3557_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f43/10683150/95804b662ce4/13287_2023_3557_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f43/10683150/be14b82c2ccb/13287_2023_3557_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f43/10683150/374454ea9bb3/13287_2023_3557_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f43/10683150/388ea84fcbc8/13287_2023_3557_Fig9_HTML.jpg

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