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描述 Aerolata Nestedonia 种,一株放线菌,从一家制药厂生产车间空气中分离得到。

Description of Nesterenkonia aerolata sp. nov., an actinobacterium isolated from air of manufacturing shop in a pharmaceutical factory.

机构信息

NMPA Key Laboratory for Testing Technology of Pharmaceutical Microbiology, Shanghai Institute for Food and Drug Control, Shanghai, People's Republic of China.

Shaanxi Zhuzhijian Planning and Design Group Co., LTD, Xi'an, People's Republic of China.

出版信息

Antonie Van Leeuwenhoek. 2024 Jan 3;117(1):8. doi: 10.1007/s10482-023-01905-1.

DOI:10.1007/s10482-023-01905-1
PMID:38170331
Abstract

During our studies on the microorganism diversity from air of manufacturing shop in a pharmaceutical factory in Shandong province, China, a Gram-stain-positive, aerobic, cocci-shaped bacterium, designated LY-0111, was isolated from a settling dish. Strain LY-0111 grew at temperature of 10-42 °C (optimum 35 °C), pH of 5.0-10.0 (optimum pH 7.0) and NaCl concentration of 1-12% (optimum 0.5-3%, w/v). Based on the 16S rRNA gene sequence analysis, the strain shared the highest sequence similarities to Nesterenkonia halophila YIM 70179 (96.2%), and was placed within the radiation of Nesterenkonia species in the phylogenetic trees. The genome of the isolate was sequenced, which comprised 2,931,270 bp with G + C content of 66.5%. A supermatrix tree based on the gene set bac120 indicated that LY-0111 was close related to Nesterenkonia xinjiangensis YIM 70097 (16S rRNA gene sequence similarity 95.3%). Chemotaxonomic analysis indicated that the main respiratory quinones were MK-7, MK-8, and MK-9, the predominant cellular fatty acids were anteiso-C and iso-C, and the major polar lipids consisted of diphosphatidylglycerol, phosphatidylglycerol and phosphatidylinositol. According to the phenotypic, chemotaxonomic and phylogenetic features, strain LY-0111 is considered to represent a novel species, for which the name Nesterenkonia aerolata sp. nov. is proposed. The type strain is LY-0111 (= JCM 36375 = GDMCC 1.3945). In addition, Nesterenkonia jeotgali was proposed as a later synonym of Nesterenkonia sandarakina, according to the ANI (96.8%) and dDDH (72.9%) analysis between them.

摘要

在对中国山东省一家制药厂生产车间空气中微生物多样性的研究中,我们从沉降盘中分离到一株革兰氏阳性、需氧、球形细菌,命名为 LY-0111。菌株 LY-0111 在 10-42°C(最佳温度 35°C)、pH 值 5.0-10.0(最佳 pH 值 7.0)和 NaCl 浓度 1-12%(最佳 0.5-3%,w/v)的条件下生长。基于 16S rRNA 基因序列分析,该菌株与 Nesterenkonia halophila YIM 70179 的序列相似度最高(96.2%),并在系统发育树中处于 Nesterenkonia 种的辐射范围内。该分离株的基因组进行了测序,基因组大小为 2,931,270 bp,GC 含量为 66.5%。基于 bac120 基因集构建的超级矩阵树表明,LY-0111 与 Nesterenkonia xinjiangensis YIM 70097 关系较近(16S rRNA 基因序列相似度 95.3%)。化学分类分析表明,主要的呼吸醌为 MK-7、MK-8 和 MK-9,主要的细胞脂肪酸为 anteiso-C 和 iso-C,主要的极性脂由双磷脂酰甘油、磷脂酰甘油和磷脂酰肌醇组成。根据表型、化学分类和系统发育特征,菌株 LY-0111 被认为代表一个新的种,命名为 Aerolata 属 Nesterenkonia aerolata sp. nov.。模式菌株为 LY-0111(=JCM 36375=GDMCC 1.3945)。此外,根据它们之间的 ANI(96.8%)和 dDDH(72.9%)分析,Nesterenkonia jeotgali 被提议作为 Nesterenkonia sandarakina 的后同物。

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本文引用的文献

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Comparative Genome Analysis of a Novel Alkaliphilic Actinobacterial Species .新型嗜堿放线菌种的比较基因组分析。
Pol J Microbiol. 2022 Sep 24;71(3):453-461. doi: 10.33073/pjm-2022-040. eCollection 2022 Sep 1.
2
TYGS and LPSN: a database tandem for fast and reliable genome-based classification and nomenclature of prokaryotes.TYGS 和 LPSN:用于快速可靠的基于基因组的原核生物分类和命名的数据库串联。
Nucleic Acids Res. 2022 Jan 7;50(D1):D801-D807. doi: 10.1093/nar/gkab902.
3
Nesterenkonia ebinurensis sp. nov., a Novel Actinobacterium Isolated From Populus euphratica.
恩氏鞘氨醇单胞菌新种,一种从胡杨中分离出的新型放线菌。
Curr Microbiol. 2021 Oct;78(10):3804-3810. doi: 10.1007/s00284-021-02597-4. Epub 2021 Sep 1.
4
Nesterenkonia haasae sp. nov., an alkaliphilic actinobacterium isolated from a degraded pasture in Songnen Plain.哈氏氮单胞菌新种,一株来自松嫩平原退化牧场的嗜堿放线菌。
Arch Microbiol. 2021 Apr;203(3):959-966. doi: 10.1007/s00203-020-02073-w. Epub 2020 Oct 26.
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Corrigendum: Update on the classification of higher ranks in the phylum .勘误:关于该门中更高等级分类的更新。
Int J Syst Evol Microbiol. 2020 Apr;70(4):2958. doi: 10.1099/ijsem.0.004110.
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sp. nov. and sp. nov., isolated from the Southern Atlantic Ocean.新种和新种,分离自南大西洋。
Int J Syst Evol Microbiol. 2020 Feb;70(2):923-928. doi: 10.1099/ijsem.0.003847.
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Nesteretal A, A Novel Class of Cage-Like Polyketide from Marine-Derived Actinomycete .内斯特等人,一种新型笼状聚酮类化合物来自海洋来源放线菌 。
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Nesterenkonia natronophila sp. nov., an alkaliphilic actinobacterium isolated from a soda lake, and emended description of the genus Nesterenkonia.嗜钠涅斯捷连科氏菌新种,一种从苏打湖分离出的嗜碱放线菌,以及涅斯捷连科氏菌属的修订描述。
Int J Syst Evol Microbiol. 2019 Jul;69(7):1960-1966. doi: 10.1099/ijsem.0.003409. Epub 2019 May 2.
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MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.MEGA X:跨越计算平台的分子进化遗传学分析。
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