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哈氏氮单胞菌新种,一株来自松嫩平原退化牧场的嗜堿放线菌。

Nesterenkonia haasae sp. nov., an alkaliphilic actinobacterium isolated from a degraded pasture in Songnen Plain.

机构信息

Key Lab of Soil Environment and Plant Nutrition of Heilongjiang Province, Heilongjiang Fertilizer Engineering Research Center, Institute of Soil Fertilizer and Environment Resources, Heilongjiang Academy of Agricultural Sciences, Harbin, 150086, People's Republic of China.

Institute of Plant Nutrition and Resources, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, People's Republic of China.

出版信息

Arch Microbiol. 2021 Apr;203(3):959-966. doi: 10.1007/s00203-020-02073-w. Epub 2020 Oct 26.

Abstract

An alkaliphilic actinobacterial strain, designated Hz 6-5, was isolated from saline-alkaline soil from Songnen Plain in north-eastern China. The isolate formed light yellow-colored colonies and its cells were Gram-staining positive, non-motile, and non-spore-forming short rods. The strain was aerobic with optimal growth at 33 °C, pH 9.0, and in the presence of 0.5% (w/v) NaCl or 3% (w/v) KCl. It was catalase-positive and oxidase-negative. The isolate had highest 16S rRNA gene sequence similarities to the type strains of the species Nesternkonia natronophila M8 (98.2%), N. salmonea GY074 (98.1%), and N. sphaerica GY239 (97.4%), and the isolate formed a subclade with the type strains of these species in the neighbor-joining tree based on the 16S rRNA gene sequences. The phylogenetic tree based on the phylogenomic analysis also showed the same results. The DNA‒DNA relatedness (DDH) values of isolate Hz 6-5 with N. natronophila M8, N. halophila DSM 16378, and N. halobia CGMCC 1.2323 were 21.2%, 36.5%, and 32.0%, respectively. The characteristic diamino acid of strain Hz 6-5 was found to be lysine. The respiratory quinones were MK-9, MK-8, MK-7(H), MK-7(H) and MK-7 and the major cellular fatty acids (> 10%) were anteiso-C, anteiso-C and iso-C. The polar lipids detected for strain Hz 6-5 were diphosphatidylglycerol, phosphatidylcholine, phosphatidylglycerol, phosphatidylinositol, an unidentified glycolipid, and two unidentified phospholipids. The DNA G + C content of isolate Hz 6-5 was 60.8%. Based on the results of phylogenetic analysis supported by morphological, physiological, chemotaxonomic, and other differentiating phenotypic evidence, strain Hz 6-5 is considered to represent a novel species of the genus Nesterenkonia, for which the name Nesterenkonia haasae sp. nov. is proposed. The type strain is Hz 6-5 (=CPCC 205100=NBRC 113521).

摘要

一株嗜堿放线菌菌株,命名为 Hz 6-5,从中国东北松嫩平原的盐碱土中分离得到。该分离株形成浅黄色菌落,细胞革兰氏染色阳性,不运动,不产孢子,呈短杆状。该菌株为需氧菌,最佳生长温度为 33°C,pH9.0,在 0.5%(w/v)NaCl 或 3%(w/v)KCl 存在下生长。它是过氧化氢酶阳性,氧化酶阴性。该分离株与模式菌株 Nesternkonia natronophila M8(98.2%)、N. salmonea GY074(98.1%)和 N. sphaerica GY239(97.4%)的 16S rRNA 基因序列相似度最高,并且在基于 16S rRNA 基因序列的邻接法系统发育树中,该分离株与这些模式菌株的形成了一个亚群。基于基因组分析的系统发育树也显示了相同的结果。菌株 Hz 6-5 与 N. natronophila M8、N. halophila DSM 16378 和 N. halobia CGMCC 1.2323 的 DNA-DNA 相关值(DDH)分别为 21.2%、36.5%和 32.0%。菌株 Hz 6-5 的特征二氨基庚二酸被发现为赖氨酸。菌株的呼吸醌为 MK-9、MK-8、MK-7(H)、MK-7(H) 和 MK-7,主要细胞脂肪酸(>10%)为 anteiso-C、anteiso-C 和 iso-C。菌株 Hz 6-5 检测到的极性脂为双磷脂酰甘油、磷脂酰胆碱、磷脂酰甘油、磷脂酰肌醇、一种未鉴定的糖脂和两种未鉴定的磷脂。菌株 Hz 6-5 的 DNA G+C 含量为 60.8%。基于形态学、生理学、化学分类学和其他鉴别表型证据支持的系统发育分析结果,菌株 Hz 6-5 被认为代表了 Nesterenkonia 属的一个新种,建议将其命名为 Nesterenkonia haasae sp. nov.。模式菌株为 Hz 6-5(=CPCC 205100=NBRC 113521)。

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