• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

电子结构的差异如何影响钒中间体作为非血红素铁羟化酶模拟物的应用?

How Do Differences in Electronic Structure Affect the Use of Vanadium Intermediates as Mimics in Nonheme Iron Hydroxylases?

机构信息

Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States.

Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States.

出版信息

Inorg Chem. 2024 Mar 18;63(11):4997-5011. doi: 10.1021/acs.inorgchem.3c04421. Epub 2024 Mar 1.

DOI:10.1021/acs.inorgchem.3c04421
PMID:38428015
Abstract

We study active-site models of nonheme iron hydroxylases and their vanadium-based mimics using density functional theory to determine if vanadyl is a faithful structural mimic. We identify crucial structural and energetic differences between ferryl and vanadyl isomers owing to the differences in their ground electronic states, i.e., high spin (HS) for Fe and low spin (LS) for V. For the succinate cofactor bound to the ferryl intermediate, we predict facile interconversion between monodentate and bidentate coordination isomers for ferryl species but difficult rearrangement for vanadyl mimics. We study isomerization of the oxo intermediate between axial and equatorial positions and find the ferryl potential energy surface to be characterized by a large barrier of ca. 10 kcal/mol that is completely absent for the vanadyl mimic. This analysis reveals even starker contrasts between Fe and V in hydroxylases than those observed for this metal substitution in nonheme halogenases. Analysis of the relative bond strengths of coordinating carboxylate ligands for Fe and V reveals that all of the ligands show stronger binding to V than Fe owing to the LS ground state of V in contrast to the HS ground state of Fe, highlighting the limitations of vanadyl mimics of native nonheme iron hydroxylases.

摘要

我们使用密度泛函理论研究非血红素铁羟化酶及其基于钒的模拟物的活性位点模型,以确定钒酰是否是一种忠实的结构模拟物。我们确定了由于其基态电子态(即 Fe 的高自旋 (HS) 和 V 的低自旋 (LS))的差异,铁氧和钒酰异构体之间存在关键的结构和能量差异。对于与铁氧中间物结合的琥珀酸辅因子,我们预测铁氧物种的单齿和双齿配位异构体之间易于互变,但钒酰模拟物不易重排。我们研究了氧中间物在轴向和赤道位置之间的异构化,发现铁氧的势能面具有约 10 kcal/mol 的大势垒,而对于钒酰模拟物则完全不存在。这种分析揭示了羟化酶中 Fe 和 V 之间的对比甚至比非血红素卤化酶中观察到的金属取代更为明显。对 Fe 和 V 配位羧酸盐配体相对键强度的分析表明,由于 V 的 LS 基态,所有配体与 V 的结合都比 Fe 强,与 Fe 的 HS 基态相反,这突出了钒酰对天然非血红素铁羟化酶的模拟物的局限性。

相似文献

1
How Do Differences in Electronic Structure Affect the Use of Vanadium Intermediates as Mimics in Nonheme Iron Hydroxylases?电子结构的差异如何影响钒中间体作为非血红素铁羟化酶模拟物的应用?
Inorg Chem. 2024 Mar 18;63(11):4997-5011. doi: 10.1021/acs.inorgchem.3c04421. Epub 2024 Mar 1.
2
Vanadyl as a Stable Structural Mimic of Reactive Ferryl Intermediates in Mononuclear Nonheme-Iron Enzymes.钒酰作为单核非血红素铁酶中反应性亚铁中间物的稳定结构模拟物。
Inorg Chem. 2017 Nov 6;56(21):13382-13389. doi: 10.1021/acs.inorgchem.7b02113. Epub 2017 Sep 29.
3
Structure of a Ferryl Mimic in the Archetypal Iron(II)- and 2-(Oxo)-glutarate-Dependent Dioxygenase, TauD.铁(II)依赖型和 2-(氧代)戊二酸依赖型双加氧酶原型 TauD 中的假过氧物结构。
Biochemistry. 2019 Oct 15;58(41):4218-4223. doi: 10.1021/acs.biochem.9b00598. Epub 2019 Oct 2.
4
Why Nonheme Iron Halogenases Do Not Fluorinate C-H Bonds: A Computational Investigation.为什么非血红素铁卤代酶不能氟化 C-H 键:计算研究。
Inorg Chem. 2023 Dec 4;62(48):19758-19770. doi: 10.1021/acs.inorgchem.3c03215. Epub 2023 Nov 16.
5
Tuning reactivity and mechanism in oxidation reactions by mononuclear nonheme iron(IV)-oxo complexes.通过单核非血红素铁(IV)-氧配合物来调节氧化反应的反应活性和反应机理。
Acc Chem Res. 2014 Apr 15;47(4):1146-54. doi: 10.1021/ar400258p. Epub 2014 Feb 13.
6
Spectroscopic and computational evaluation of the structure of the high-spin Fe(IV)-oxo intermediates in taurine: alpha-ketoglutarate dioxygenase from Escherichia coli and its His99Ala ligand variant.大肠杆菌中牛磺酸:α-酮戊二酸双加氧酶及其His99Ala配体变体的高自旋Fe(IV)-氧中间体结构的光谱和计算评估
J Am Chem Soc. 2007 May 16;129(19):6168-79. doi: 10.1021/ja067899q. Epub 2007 Apr 24.
7
Synthetic mononuclear nonheme iron-oxygen intermediates.合成单核非血红素铁-氧中间体。
Acc Chem Res. 2015 Aug 18;48(8):2415-23. doi: 10.1021/acs.accounts.5b00218. Epub 2015 Jul 23.
8
Density functional theory applied to a difference in pathways taken by the enzymes cytochrome P450 and superoxide reductase: spin States of ferric hydroperoxo intermediates and hydrogen bonds from water.密度泛函理论在细胞色素 P450 和超氧化物还原酶途径差异中的应用:铁过氧氢中间物的自旋态和来自水的氢键。
Inorg Chem. 2010 Jan 4;49(1):188-98. doi: 10.1021/ic9017272.
9
Formation of the iron-oxo hydroxylating species in the catalytic cycle of aromatic amino acid hydroxylases.芳香族氨基酸羟化酶催化循环中铁-氧羟化物种的形成。
Chemistry. 2011 Mar 21;17(13):3746-58. doi: 10.1002/chem.201002910. Epub 2011 Feb 24.
10
Axial ligand coordination in sterically strained vanadyl porphyrins: synthesis, structure, and properties.空间位阻钒氧卟啉中的轴向配体配位:合成、结构与性质
Inorg Chem. 2008 Nov 3;47(21):9848-56. doi: 10.1021/ic800714w. Epub 2008 Sep 30.

引用本文的文献

1
Optimized Substrate Positioning Enables Switches in the C-H Cleavage Site and Reaction Outcome in the Hydroxylation-Epoxidation Sequence Catalyzed by Hyoscyamine 6β-Hydroxylase.优化的底物定位使颠茄碱 6β-羟化酶催化的 C-H 裂解位点和反应产物在羟化-环氧化序列中发生转变。
J Am Chem Soc. 2024 Sep 4;146(35):24271-24287. doi: 10.1021/jacs.4c04406. Epub 2024 Aug 22.