Institute of Marine Biology, College of Life Science, National Taiwan Ocean University, Keelung, Taiwan.
Centre of Excellence for the Oceans, National Taiwan Ocean University, Keelung, Taiwan.
Antonie Van Leeuwenhoek. 2024 Mar 7;117(1):49. doi: 10.1007/s10482-024-01948-y.
A marine bacterial strain, named NTOU-MSR1, was isolated from marine sediment of northern coast of Taiwan. This bacterium was Gram-stain-negative, aerobic, and motile, with a single flagellum. Its rod-shaped cells measured approximately 0.5-0.6 µm in width and 1.8-2.0 μm in length. NTOU-MSR1 grew at temperatures ranging from 10 to 45 °C, optimally at 30 °C. The pH range for growth was 7.0-10.0, with optimal growth at pH 7.0-8.0. It tolerated NaCl concentrations up to 12%. The cell membrane predominantly contained fatty acids such Cω7c, Cω7c, and C. The overall genome relatedness indices indicated that strain NTOU-MSR1 had an average nucleotide identity (ANI) of 87.88% and a digital DNA-DNA hybridization (dDDH) value of 35.40% compared to its closest related species, O. marisflavi 102-Na3. These values fell below the 95% and 70% threshold for species delineation, respectively. These findings suggested that the strain NTOU-MSR1 was a new member of the Oceanimonas genus. Its genomic DNA had a G + C content of 61.0 mol%. Genomic analysis revealed genes associated with the catechol branch of β- ketoadipate pathway for degrading polycyclic aromatic hydrocarbons, resistance to heavy metal, biosynthesis of polyhydroxybutyrate and the production of glycoside hydrolases (GH19, GH23, and GH103) for chitin and glycan digestion. Additionally, NTOU-MSR1 was capable of synthesizing biosurfactants and potentially degrading plastic. The proposed name for this new species is Oceanimonas pelagia, with the type strain designated as NTOU-MSR1 (= BCRC 81403 = JCM 36023).
一株海洋细菌菌株,命名为 NTOU-MSR1,从台湾北部海岸的海洋沉积物中分离得到。该菌革兰氏染色阴性,需氧,运动,有单鞭毛。其杆状细胞宽约 0.5-0.6μm,长约 1.8-2.0μm。NTOU-MSR1 在 10 至 45°C 的温度范围内生长,最佳生长温度为 30°C。生长的 pH 范围为 7.0-10.0,最佳生长 pH 为 7.0-8.0。它能耐受高达 12%的 NaCl 浓度。细胞膜主要含有脂肪酸,如 Cω7c、Cω7c 和 C。全基因组相关指数表明,菌株 NTOU-MSR1 与最接近的相关物种 O. marisflavi 102-Na3 的平均核苷酸同一性 (ANI) 为 87.88%,数字 DNA-DNA 杂交 (dDDH) 值为 35.40%。这些值分别低于种间区分的 95%和 70%的阈值。这些发现表明,菌株 NTOU-MSR1 是海洋单胞菌属的一个新成员。其基因组 DNA 的 G+C 含量为 61.0 mol%。基因组分析显示了与多环芳烃降解的儿茶酚分支β-酮戊二酸途径、重金属抗性、聚羟基丁酸的生物合成以及糖苷水解酶(GH19、GH23 和 GH103)有关的基因,用于几丁质和糖甘的消化。此外,NTOU-MSR1 能够合成生物表面活性剂并可能降解塑料。该新物种的命名为海洋单胞菌 pelagia,其模式菌株命名为 NTOU-MSR1(=BCRC 81403=JCM 36023)。