Skryabin Institute of Bioengineering, Research Centre of Biotechnology, Russian Academy of Sciences, Moscow, Russia.
Winogradsky Institute of Microbiology, Research Centre of Biotechnology, Russian Academy of Sciences, Moscow, Russia; Department of Biotechnology, Delft University of Technology, Delft, The Netherlands.
Syst Appl Microbiol. 2023 May;46(3):126406. doi: 10.1016/j.syapm.2023.126406. Epub 2023 Feb 26.
A spiral-shaped, highly motile bacterium was isolated from freshwater sulfidic sediment. Strain J10 is a facultative autotroph utilizing sulfide, thiosulfate, and sulfur as the electron donors in microoxic conditions. Despite high 16S rRNA gene sequence sequence identity to Magnetospirillum gryphiswaldense MSR-1 (99.6 %), digital DNA-DNA hybridisation homology and average nucleotide identity between the two strains was of the different species level (25 % and 83 %, respectively). Strain J10 is not magnetotactic. The DNA G + C content of strain J10 is 61.9 %. The predominant phospholipid ester-linked fatty acids are C18:1ω7, C16:1ω7, and C16:0. Strain J10 (=DSM 23205 = VKM B-3486 ) is the first strain of the genus Magnetospirillum showing lithoautotrophic growth and is proposed here as a novel species, Magnetospirillum sulfuroxidans sp. nov. In addition, we propose to establish a framework for distinguishing genera and families within the order Rhodospirillales based on phylogenomic analysis using the threshold values for average amino acid identity at ̴ 72 % for genera and ̴ 60 % for families. According to this, we propose to divide the existing genus Magnetospirillum into three genera: Magnetospirillum, Paramagnetospirillum, and Phaeospirillum, constituting a separate family Magnetospirillaceae fam. nov. in the order Rhodospirillales. Furthermore, phylogenomic data suggest that this order should accomodate six more new family level groups including Magnetospiraceae fam. nov., Magnetovibrionaceae fam. nov., Dongiaceae fam. nov., Niveispirillaceae fam. nov., Fodinicurvataceae fam. nov., and Oceanibaculaceae fam. nov.
从淡水硫化沉积物中分离出一种螺旋形、高度运动的细菌。菌株 J10 是一种兼性自养菌,可在微氧条件下利用硫化物、硫代硫酸盐和硫作为电子供体。尽管与 Magnetospirillum gryphiswaldense MSR-1 的 16S rRNA 基因序列相似度很高(99.6%),但两株菌之间的数字 DNA-DNA 杂交同源性和平均核苷酸同一性属于不同的种水平(分别为 25%和 83%)。菌株 J10 不是磁趋性的。菌株 J10 的 DNA G+C 含量为 61.9%。主要的磷脂酯键脂肪酸是 C18:1ω7、C16:1ω7 和 C16:0。菌株 J10(=DSM 23205=VKM B-3486)是第一个显示出岩石自养生长的 Magnetospirillum 菌株,被提议作为一个新物种 Magnetospirillum sulfuroxidans sp. nov. 此外,我们建议根据使用平均氨基酸同一性阈值为 72%用于属和 60%用于科的系统发育基因组分析,为区分红螺菌目内的属和科建立一个框架。根据这一框架,我们建议将现有的 Magnetospirillum 属分为三个属:Magnetospirillum、Paramagnetospirillum 和 Phaeospirillum,构成一个单独的科 Magnetospirillaceae fam. nov. 在红螺菌目中。此外,系统发育基因组数据表明,该目应该容纳六个新的科级群,包括 Magnetospiraceae fam. nov.、Magnetovibrionaceae fam. nov.、Dongiaceae fam. nov.、Niveispirillaceae fam. nov.、Fodinicurvataceae fam. nov. 和 Oceanibaculaceae fam. nov.