国家基因组数据中心的植物基因组资源:助力数据驱动的育种应用。

Plant genomic resources at National Genomics Data Center: assisting in data-driven breeding applications.

作者信息

Tian Dongmei, Xu Tianyi, Kang Hailong, Luo Hong, Wang Yanqing, Chen Meili, Li Rujiao, Ma Lina, Wang Zhonghuang, Hao Lili, Tang Bixia, Zou Dong, Xiao Jingfa, Zhao Wenming, Bao Yiming, Zhang Zhang, Song Shuhui

机构信息

National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences & China National Center for Bioinformation, Beijing, 100101 China.

CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences & China National Center for Bioinformation, Beijing, 100101 China.

出版信息

aBIOTECH. 2024 Feb 2;5(1):94-106. doi: 10.1007/s42994-023-00134-4. eCollection 2024 Mar.

Abstract

UNLABELLED

Genomic data serve as an invaluable resource for unraveling the intricacies of the higher plant systems, including the constituent elements within and among species. Through various efforts in genomic data archiving, integrative analysis and value-added curation, the National Genomics Data Center (NGDC), which is a part of the China National Center for Bioinformation (CNCB), has successfully established and currently maintains a vast amount of database resources. This dedicated initiative of the NGDC facilitates a data-rich ecosystem that greatly strengthens and supports genomic research efforts. Here, we present a comprehensive overview of central repositories dedicated to archiving, presenting, and sharing plant omics data, introduce knowledgebases focused on variants or gene-based functional insights, highlight species-specific multiple omics database resources, and briefly review the online application tools. We intend that this review can be used as a guide map for plant researchers wishing to select effective data resources from the NGDC for their specific areas of study.

SUPPLEMENTARY INFORMATION

The online version contains supplementary material available at 10.1007/s42994-023-00134-4.

摘要

未标注

基因组数据是揭示高等植物系统复杂性的宝贵资源,包括物种内部和物种之间的组成要素。通过在基因组数据存档、综合分析和增值整理方面的各种努力,作为中国国家生物信息中心(CNCB)一部分的国家基因组数据中心(NGDC)已成功建立并目前维护着大量的数据库资源。NGDC的这一专项举措促进了一个数据丰富的生态系统,极大地加强和支持了基因组研究工作。在此,我们全面概述了致力于存档、展示和共享植物组学数据的核心存储库,介绍了专注于变异或基于基因的功能见解的知识库,突出了特定物种的多组学数据库资源,并简要回顾了在线应用工具。我们希望这篇综述能够作为一份指南,供希望从NGDC中为其特定研究领域选择有效数据资源的植物研究人员参考。

补充信息

在线版本包含可在10.1007/s42994-023-00134-4获取的补充材料。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7a18/10987443/0fff31025462/42994_2023_134_Fig1_HTML.jpg

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