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小麦基因家族的全基因组特征分析与表达分析揭示了它们在发育和胁迫特异性反应中的作用。

Genome wide characterization and expression analysis of gene family in wheat unravels their roles in development and stress-specific responses.

作者信息

Gawande Nilesh D, Sankaranarayanan Subramanian

机构信息

Department of Biological Sciences and Engineering, Indian Institute of Technology Gandhinagar, Palaj, Gujarat, India.

出版信息

Front Plant Sci. 2024 Mar 26;15:1345774. doi: 10.3389/fpls.2024.1345774. eCollection 2024.

Abstract

() genes encode a subfamily of receptor-like kinases (RLK) that regulate diverse processes during plant growth, development, and stress responses. The first CrRLK1L was identified from the , commonly known as Madagascar periwinkle. Subsequently, CrRLK1L gene families have been characterized in many plants. The genome of encodes 15 genes with 43 paralogous copies, with three homeologs each, except for D and A, which are absent. Chromosomal localization analysis revealed a markedly uneven distribution of genes across seven different chromosomes, with chromosome 4 housing the highest number of genes, while chromosome 6 lacked any genes. Tissue-specific gene expression analysis revealed distinct expression patterns among the gene family members, with certain members exhibiting increased expression in reproductive tissues. Gene expression analysis in response to various abiotic and biotic stress conditions unveiled differential regulation of gene family members. Cold stress induces CrRLK1Ls and while downregulating and . Drought stress upregulates , contrasting with the downregulation of . and were highly induced in response to 1 hr of heat, and combined drought and heat stress, whereas is downregulated. Similarly, in response to NaCl stress, only homeologs were induced. and inoculation induces homeologs of and . The analysis of -acting elements in the promoter regions identified elements crucial for plant growth and developmental processes. This comprehensive genome-wide analysis and expression study provides valuable insights into the essential functions of CrRLK1L members in wheat.

摘要

()基因编码一类受体样激酶(RLK)亚家族,该亚家族在植物生长、发育和应激反应过程中调节多种进程。首个CrRLK1L是从俗称长春花的植物中鉴定出来的。随后,CrRLK1L基因家族已在许多植物中得到表征。[植物名称]的基因组编码15个[基因名称]基因,有43个旁系同源拷贝,除了缺失的D和A外,每个都有三个同源基因。染色体定位分析显示[基因名称]基因在七条不同染色体上分布明显不均,4号染色体上的基因数量最多,而6号染色体上没有任何[基因名称]基因。组织特异性基因表达分析揭示了基因家族成员之间不同的表达模式,某些成员在生殖组织中表达增加。对各种非生物和生物胁迫条件的基因表达分析揭示了基因家族成员的差异调节。冷胁迫诱导CrRLK1Ls[基因名称1]和[基因名称2],同时下调[基因名称3]和[基因名称4]。干旱胁迫上调[基因名称5],与[基因名称6]的下调形成对比。[基因名称7]和[基因名称8]在1小时热胁迫以及干旱和热胁迫组合处理下高度诱导,而[基因名称9]被下调。同样,在NaCl胁迫下,仅诱导[基因名称10]的同源基因。[病原体名称]接种诱导[基因名称11]和[基因名称12]的同源基因。对启动子区域顺式作用元件的分析确定了对植物生长和发育过程至关重要的元件。这项全面的全基因组分析和表达研究为小麦中CrRLK1L成员的基本功能提供了有价值的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8719/11002176/1b218288c983/fpls-15-1345774-g001.jpg

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