• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

基于全自动神经网络方法对小梁骨组织冷冻切片进行定量分析。

Quantitative analysis of trabecular bone tissue cryosections via a fully automated neural network-based approach.

机构信息

Department of General Surgery, Visceral, Thoracic and Vascular Surgery, University Medical Center Greifswald, Greifswald, Germany.

University of Heidelberg, BioQuant Center, Heidelberg, Germany.

出版信息

PLoS One. 2024 Apr 16;19(4):e0298830. doi: 10.1371/journal.pone.0298830. eCollection 2024.

DOI:10.1371/journal.pone.0298830
PMID:38625969
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11020490/
Abstract

Cryosectioning is known as a common and well-established histological method, due to its easy accessibility, speed, and cost efficiency. However, the creation of bone cryosections is especially difficult. In this study, a cryosectioning protocol for trabecular bone that offers a relatively cheap and undemanding alternative to paraffin or resin embedded sectioning was developed. Sections are stainable with common histological dying methods while maintaining sufficient quality to answer a variety of scientific questions. Furthermore, this study introduces an automated protocol for analysing such sections, enabling users to rapidly access a wide range of different stainings. Therefore, an automated 'QuPath' neural network-based image analysis protocol for histochemical analysis of trabecular bone samples was established, and compared to other automated approaches as well as manual analysis regarding scattering, quality, and reliability. This highly automated protocol can handle enormous amounts of image data with no significant differences in its results when compared with a manual method. Even though this method was applied specifically for bone tissue, it works for a wide variety of different tissues and scientific questions.

摘要

冷冻切片是一种常见且成熟的组织学方法,因其易于获取、速度快且成本效益高而被广泛应用。然而,骨组织的冷冻切片制备特别困难。在这项研究中,我们开发了一种用于小梁骨的冷冻切片方案,与石蜡或树脂包埋切片相比,该方案提供了一种相对廉价且不苛刻的替代方法。用常规的组织学染色方法对切片进行染色,同时保持足够的质量以回答各种科学问题。此外,本研究还介绍了一种用于分析此类切片的自动化方案,使用户能够快速访问各种不同的染色方法。因此,我们建立了一个基于自动化“QuPath”神经网络的用于小梁骨样本组织化学分析的图像分析协议,并与其他自动化方法以及手动分析进行了比较,包括散射、质量和可靠性。与手动方法相比,该高度自动化的方案可以处理大量的图像数据,其结果没有显著差异。尽管该方法专门应用于骨组织,但它适用于广泛的不同组织和科学问题。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fb90/11020490/d914389ab6d4/pone.0298830.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fb90/11020490/dbedd75351a8/pone.0298830.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fb90/11020490/b68a85349053/pone.0298830.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fb90/11020490/e0e8fa7ff8fc/pone.0298830.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fb90/11020490/d914389ab6d4/pone.0298830.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fb90/11020490/dbedd75351a8/pone.0298830.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fb90/11020490/b68a85349053/pone.0298830.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fb90/11020490/e0e8fa7ff8fc/pone.0298830.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fb90/11020490/d914389ab6d4/pone.0298830.g004.jpg

相似文献

1
Quantitative analysis of trabecular bone tissue cryosections via a fully automated neural network-based approach.基于全自动神经网络方法对小梁骨组织冷冻切片进行定量分析。
PLoS One. 2024 Apr 16;19(4):e0298830. doi: 10.1371/journal.pone.0298830. eCollection 2024.
2
Optical disector counting in cryosections and vibratome sections underestimates particle numbers: effects of tissue quality.在冷冻切片和振动切片机切片中进行光学分选计数会低估颗粒数量:组织质量的影响。
Microsc Res Tech. 2008 Jan;71(1):60-8. doi: 10.1002/jemt.20525.
3
A modified tape transfer approach for rapidly preparing high-quality cryosections of undecalcified adult rodent bones.一种用于快速制备成年啮齿动物未脱钙骨骼高质量冰冻切片的改良胶带转移方法。
J Orthop Translat. 2020 Mar 31;26:92-100. doi: 10.1016/j.jot.2020.03.001. eCollection 2021 Jan.
4
Boric acid-enhanced embedding medium for cryomicrotomy.硼酸增强型冷冻切片包埋剂。
Acta Histochem. 2012 May;114(3):296-9. doi: 10.1016/j.acthis.2011.04.005. Epub 2011 May 13.
5
Erratum: Eyestalk Ablation to Increase Ovarian Maturation in Mud Crabs.勘误:切除眼柄以增加泥蟹的卵巢成熟度。
J Vis Exp. 2023 May 26(195). doi: 10.3791/6561.
6
Trabecular Bone Microarchitecture Evaluation in an Osteoporosis Mouse Model.骨质疏松症小鼠模型中的小梁骨微结构评估。
J Vis Exp. 2023 Sep 8(199). doi: 10.3791/65880.
7
Cryosectioning.冷冻切片术
Methods Mol Biol. 2013;1018:301-11. doi: 10.1007/978-1-62703-444-9_28.
8
Detection and Automated Analysis of Single Transcripts at Subcellular Resolution in Zebrafish Embryos.斑马鱼胚胎中亚细胞分辨率下单转录本的检测与自动分析
Methods Mol Biol. 2018;1649:143-162. doi: 10.1007/978-1-4939-7213-5_9.
9
Novel polyvinyl alcohol (PVA) based cryoprotection method that facilitates cutting frozen sections of decalcified human trabecular bone.一种新型聚乙烯醇(PVA)基冷冻保护剂,可方便地对脱钙人小梁骨进行冷冻切片。
Histol Histopathol. 2013 Dec;28(12):1605-11. doi: 10.14670/HH-28.1605. Epub 2013 May 29.
10
Gelatin-embedded cell-polymer constructs for histological cryosectioning.用于组织学冷冻切片的明胶包埋细胞-聚合物构建体。
J Biomed Mater Res B Appl Biomater. 2005 Jan 15;72(1):79-85. doi: 10.1002/jbm.b.30116.

引用本文的文献

1
Histone methyltransferase ASH1L primes metastases and metabolic reprogramming of macrophages in the bone niche.组蛋白甲基转移酶ASH1L引发骨微环境中巨噬细胞的转移和代谢重编程。
Nat Commun. 2025 May 20;16(1):4681. doi: 10.1038/s41467-025-59381-2.

本文引用的文献

1
User-Accessible Machine Learning Approaches for Cell Segmentation and Analysis in Tissue.用于组织中细胞分割与分析的用户可访问机器学习方法
Front Physiol. 2022 Mar 10;13:833333. doi: 10.3389/fphys.2022.833333. eCollection 2022.
2
Diagnostic variability in the histopathological assessment of advanced colorectal adenomas and early colorectal cancer in a screening population.在筛查人群中,对晚期结直肠腺瘤和早期结直肠癌的组织病理学评估存在诊断变异性。
Histopathology. 2022 Apr;80(5):790-798. doi: 10.1111/his.14601. Epub 2022 Jan 10.
3
A review on deep learning in medical image analysis.
医学图像分析中的深度学习综述。
Int J Multimed Inf Retr. 2022;11(1):19-38. doi: 10.1007/s13735-021-00218-1. Epub 2021 Sep 4.
4
Association of systemic antibody response against polyethylene terephthalate with inflammatory serum cytokine profile following implantation of differently coated vascular prostheses in a rat animal model.在大鼠动物模型中植入不同涂层血管假体后,针对聚对苯二甲酸乙二酯的全身抗体反应与炎性血清细胞因子谱的关联。
J Biomed Mater Res A. 2022 Jan;110(1):52-63. doi: 10.1002/jbm.a.37265. Epub 2021 Jul 9.
5
[Artificial intelligence in image analysis-fundamentals and new developments].[图像分析中的人工智能——基础与新进展]
Hautarzt. 2020 Sep;71(9):660-668. doi: 10.1007/s00105-020-04663-7.
6
Network-based strategies in metabolomics data analysis and interpretation: from molecular networking to biological interpretation.基于网络的代谢组学数据分析和解释策略:从分子网络到生物学解释。
Expert Rev Proteomics. 2020 Apr;17(4):243-255. doi: 10.1080/14789450.2020.1766975. Epub 2020 Jun 4.
7
Effects of copper-impregnated collagen implants on local pro- and anti-inflammatory and regenerative tissue reactions following implantation in rats.铜浸渍胶原植入物对大鼠植入后局部促炎和抗炎及再生组织反应的影响。
J Biomed Mater Res A. 2020 Apr;108(4):871-881. doi: 10.1002/jbm.a.36865. Epub 2019 Dec 27.
8
[Radiomics-AI-based image analysis].基于放射组学-人工智能的图像分析
Pathologe. 2019 Dec;40(Suppl 3):271-276. doi: 10.1007/s00292-019-00704-8.
9
Neural network models and deep learning.神经网络模型与深度学习。
Curr Biol. 2019 Apr 1;29(7):R231-R236. doi: 10.1016/j.cub.2019.02.034.
10
U-Net: deep learning for cell counting, detection, and morphometry.U-Net:用于细胞计数、检测和形态测量学的深度学习。
Nat Methods. 2019 Jan;16(1):67-70. doi: 10.1038/s41592-018-0261-2. Epub 2018 Dec 17.