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癌症研究中的开放科学现状。

State of open science in cancer research.

机构信息

UISYS Group, Department of History of Science and Information Science, Faculty of Medicine and Dentistry, University of Valencia, Valencia, Spain.

Unit associated with the Interuniversity Institute for Advanced Research on the Evaluation of Science and the University (INAECU) UC3M-UAM, Madrid, Spain.

出版信息

Clin Transl Oncol. 2024 Oct;26(10):2457-2465. doi: 10.1007/s12094-024-03468-7. Epub 2024 Apr 18.

DOI:10.1007/s12094-024-03468-7
PMID:38635076
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11410906/
Abstract

PURPOSE

This study has been focused on assessing the Open Science scenario of cancer research during the period 2011-2021, in terms of the derived scientific publications and raw data dissemination.

METHODS

A cancer search equation was executed in the Science Citation Index-Expanded, collecting the papers signed by at least one Spanish institution. The same search strategy was performed in the Data Citation Index to describe dataset diffusion.

RESULTS

50,822 papers were recovered, 71% of which belong to first and second quartile journals. 59% of the articles were published in Open Access (OA) journals. The Open Access model and international collaboration positively conditioned the number of citations received. Among the most productive journals stood out Plos One, Cancers, and Clinical and Translational Oncology. 2693 genomics, proteomics and metabolomics datasets were retrieved, being Gene Expression Omnibus the favoured repository.

CONCLUSIONS

There has been an increase in oncology publications in Open Access. Most were published in first quartile journals and received higher citations than non-Open Access articles, as well as when oncological investigation was performed between international research teams, being relevant in the context of Open Science. Genetic repositories have been the preferred for sharing oncology datasets. Further investigation of research and data sharing in oncology is needed, supported by stronger Open Science policies, to achieve better data sharing practices among three scientific main pillars: researchers, publishers, and scientific organizations.

摘要

目的

本研究聚焦于评估 2011 年至 2021 年间癌症研究的开放科学情景,从衍生的科学出版物和原始数据传播两个方面进行评估。

方法

在科学引文索引扩展版中执行癌症搜索方程,收集至少有一个西班牙机构签署的论文。采用相同的搜索策略在数据引文索引中描述数据集的扩散。

结果

共检索到 50822 篇论文,其中 71%属于第一和第二四分位期刊。59%的文章发表在开放获取(OA)期刊上。开放获取模式和国际合作对获得的引用次数有积极影响。最具生产力的期刊中包括 Plos One、Cancers 和 Clinical and Translational Oncology。共检索到 2693 个基因组学、蛋白质组学和代谢组学数据集,其中基因表达综合数据库是首选的存储库。

结论

开放获取的肿瘤学出版物有所增加。大多数发表在第一四分位期刊上,获得的引用数高于非开放获取文章,以及当国际研究团队之间进行肿瘤学研究时,这在开放科学背景下具有重要意义。遗传资源库是分享肿瘤数据集的首选。需要进一步调查肿瘤学的研究和数据共享,并辅以更强有力的开放科学政策,以实现研究人员、出版商和科学组织这三个科学主要支柱之间更好的数据共享实践。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d88/11410906/63af2714499b/12094_2024_3468_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d88/11410906/0522ceeda099/12094_2024_3468_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d88/11410906/0ae2b1aa5b22/12094_2024_3468_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d88/11410906/db0e4917cc3a/12094_2024_3468_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d88/11410906/8c2d3f54199b/12094_2024_3468_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d88/11410906/63af2714499b/12094_2024_3468_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d88/11410906/0522ceeda099/12094_2024_3468_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d88/11410906/0ae2b1aa5b22/12094_2024_3468_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d88/11410906/db0e4917cc3a/12094_2024_3468_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d88/11410906/8c2d3f54199b/12094_2024_3468_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d88/11410906/63af2714499b/12094_2024_3468_Fig5_HTML.jpg

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Evaluating open access publication and research impact in gynecologic oncology.评估妇科肿瘤学中的开放获取出版和研究影响力。
Int J Gynecol Cancer. 2023 Jul 3;33(7):1112-1117. doi: 10.1136/ijgc-2023-004460.
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The impact of GDPR on data sharing for European cancer research.《通用数据保护条例》对欧洲癌症研究数据共享的影响。
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Data sharing to improve concordance in variant interpretation across laboratories: results from the Canadian Open Genetics Repository.数据共享以提高实验室间变异解释的一致性:来自加拿大开放遗传资源库的结果。
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